Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05352 ATGGATTTCCCAAACAAAAATACAATACTAGAAACCGTTTATGAGAGTTTGAACACACCACAAAACCTTATCAATGTTCTTACTCACCAACCCTCTCATTTTAAGTCTAATATCACAAATACAACCGTTGCCAATTTCAAAAAACTCTCCTCCTCCTCCTCCTTACTCAACCGCACTGGCCATGCCCGTTTTCGCCGCGCTCCGATGGTTACATTACCTCAACCGCCACAAACTTCCTTTCCCTCCACTACTATGCCACCGTCACCACTTCATATTCAACCTCAACACCAATCTTCAACTCTAGATTTCAATAAACCTGACATCATTAGATTTAACCCTAAATTCTTATCATTAGATCTTGAATTCCCAAAAGAAACATTTAGTGTTTCATCTAACTCATCCTTCATGTCATCCACCATCACCGGCGACGACATCATTTCCAACAGCAAACAAGGTTCACATCTCTTTCCCACACCGGCGATCTTTAGTGGTAAACCGCCTCTTTCATCGTCGTCATTGAAGAATAAGTGTCACGGCCACTCTGACGGCGAAACGCGCTCCCGTTCTAACAAATGTCACTGCACAAACAAAAGGAAGAATAAGTTGAAGAGAACGGTGAGAGTAGCGGCAATAAGTGATAAAATTGCCGATATACCAACAGATGAATATTCGTGGAGAAAGTATGGTCAAAAATCGATAAAGGGATCACCGTATCCAAGGGGATATTATAAGTGCACTACAATGAAAGAGTGTCCAGCTAGAAAAAAGGTTGAGAGGGCAAAGGATGATCCTAAGATGATGATTGTAACGTACGAGGAAGAACATTGTCATGAGATTGATACAGAGAATATTTCTAGGAGTGGAGGATTTAGTGGTATTTGA 882 0.4116 MDFPNKNTILETVYESLNTPQNLINVLTHQPSHFKSNITNTTVANFKKLSSSSSLLNRTGHARFRRAPMVTLPQPPQTSFPSTTMPPSPLHIQPQHQSSTLDFNKPDIIRFNPKFLSLDLEFPKETFSVSSNSSFMSSTITGDDIISNSKQGSHLFPTPAIFSGKPPLSSSSLKNKCHGHSDGETRSRSNKCHCTNKRKNKLKRTVRVAAISDKIADIPTDEYSWRKYGQKSIKGSPYPRGYYKCTTMKECPARKKVERAKDDPKMMIVTYEEEHCHEIDTENISRSGGFSGI 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05352 293 ProSiteProfiles WRKY domain profile. 214 280 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre5g05352 293 Pfam WRKY DNA -binding domain 221 277 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre5g05352 293 Pfam Plant zinc cluster domain 174 217 IPR018872 -
Trre5g05352 293 FunFam WRKY transcription factor 65 203 280 - -
Trre5g05352 293 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 22 278 IPR044810 GO:0003700
Trre5g05352 293 MobiDBLite consensus disorder prediction 166 192 - -
Trre5g05352 293 SMART WRKY_cls 219 279 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre5g05352 293 MobiDBLite consensus disorder prediction 72 98 - -
Trre5g05352 293 MobiDBLite consensus disorder prediction 177 191 - -
Trre5g05352 293 SUPERFAMILY WRKY DNA-binding domain 217 279 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre5g05352 293 Gene3D WRKY domain 204 279 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre5g05352 293 MobiDBLite consensus disorder prediction 71 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05352 Trre-Chr5 54306455 54307767 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05352 5 281 WRKY Transcription Factor Family AT2G24570 50.492 6.42e-73 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre5g05352 WRKY 7.3e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05352 - - gmx:100127394 278.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05352 5 54306455 54307767 Trre5g05352 5 54306455 54307767 ECH