Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05346 ATGGATGAATATTCTGGTAAAAGAGCCGTTGATGGGGTGCTAGTCCCTAGAAAGGGGATGGGCAGCATGTTAAAAGATACTGCCAATACTCGAGATCGAAATGGTCAAGTATGTAGCCGTCTTGGTTGCAGCAGCAAAGTTAACTCTTCTAAAGGCTCTCAAATTGGTTCCTCCGAAAAGGGTAAATCGTTGAGGCCTTCATTTCGGTTCTCATCAAATGGTAAGGAAACAATTGGCAGCTCCTCTAAAAATTTCTCCGGGAGTAGTAACCCAGGAAAACCTCATAGAAAGCCTCAGAAAACATTATCATCTCATGTAGAGACAGATTCGTCTGAAACTAGTAGTGTACAAGATGAACCAGAAGTTCCAAAGCTCGTACCAGAAAAAAATCAGAAGGGACGTCAAGCTGAAGGGGAACACACAGAGTCTGGTAATGGCATGCAGACGGAAGTAGGGAGTTCTAGTTTAGCATCTAATACAAGATCAAGGAGGAATTTTCATCCAAAACCTGGATTACGTAGTCAAGAAATTCAAAGCACCGGTCCAGGGACACGTGCTGGTACCAGTAGGTATGGATTAAGGAACCTCAAATGCAACTCCATTTCTGATGTCATTCCGGCCGGCTGTACACCATCAGATTCAAACCTTAACAAAAGGAAGGATGCGATAAAAAAAAGAAATTGTGAAGGCGAAAGTAGTTCTACAGCCAAAGGGAAAAAAATAAACGGGCCCTCGGTAGAAGGACGGAATTCTGTTTCCAGAAATGGCATATCTATCTCTGATTCAAGAATATCAAGAAATACCTCTAATAGAGACAGAACAGACAGCAACATAACGTCTGTTAGAACACGAAGATCAATTGGTGGTCATGCTAGGGGAAGGCTTTCTGGCCAAGGAAATGCTAATCCTGTGGCATCAAATCAGTCCCTTATCATGGTGCCTTCTTTTTCTCATTCTGGCAATCTTAATGCTCCTGGTGCACAACATCATAATTCTCTGGAGACTCCTTCAAGTCCAAGCTCTTACAGTGGAGCAGGTACTAGCAGTGAGGAGTTATACGGTGTTATGCCAGGGTCACCTGCAGAATATGGCCTCACTAATTCTCTAATAAATCGGGATAACTTTCGACGACGCTACAACATGGATGGTATTGCAGAGGTATTGTTGGCACTTGAGAGGATTGAACAAGATGTCGAGCTAACACACGAGCAAATTCTTTTGCTGGAATCCAACTTGTTCCTTACTGGATTAAACTTCTACGATCAGCACAGAGAAATGCGGTTGGACATTGATAATATGTCATATGAGGAACTACTGGCTCTGGAAGAGAGGATGGGTACTGTGAGCACAGCTGTAACCGAGGAAGATCTATCAGAATGCCTAAAGAGAAGTTCCTTTCAATCCTCACCCTCAGAGAATGCATCTAAGTGTTGCAATGAGAATAAGGATGATATCAAATGCAGCATCTGCCAGGAGGAATATGTGGCGGAGGATGAAGTGGGGAGTCTACTATGCGAACACAAGTATCACGCTGTTTGCATACAGCAATGGCTACGACTCAAGAACTGGTGCCCTATTTGCAAAGCATCAGTGGCACAGTCAAGTTCATCGTCGTCCAACTAA 1623 0.435 MDEYSGKRAVDGVLVPRKGMGSMLKDTANTRDRNGQVCSRLGCSSKVNSSKGSQIGSSEKGKSLRPSFRFSSNGKETIGSSSKNFSGSSNPGKPHRKPQKTLSSHVETDSSETSSVQDEPEVPKLVPEKNQKGRQAEGEHTESGNGMQTEVGSSSLASNTRSRRNFHPKPGLRSQEIQSTGPGTRAGTSRYGLRNLKCNSISDVIPAGCTPSDSNLNKRKDAIKKRNCEGESSSTAKGKKINGPSVEGRNSVSRNGISISDSRISRNTSNRDRTDSNITSVRTRRSIGGHARGRLSGQGNANPVASNQSLIMVPSFSHSGNLNAPGAQHHNSLETPSSPSSYSGAGTSSEELYGVMPGSPAEYGLTNSLINRDNFRRRYNMDGIAEVLLALERIEQDVELTHEQILLLESNLFLTGLNFYDQHREMRLDIDNMSYEELLALEERMGTVSTAVTEEDLSECLKRSSFQSSPSENASKCCNENKDDIKCSICQEEYVAEDEVGSLLCEHKYHAVCIQQWLRLKNWCPICKASVAQSSSSSSN 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05346 540 MobiDBLite consensus disorder prediction 1 305 - -
Trre5g05346 540 Coils Coil 391 411 - -
Trre5g05346 540 MobiDBLite consensus disorder prediction 321 348 - -
Trre5g05346 540 MobiDBLite consensus disorder prediction 122 139 - -
Trre5g05346 540 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 74 532 IPR045191 GO:0061630
Trre5g05346 540 MobiDBLite consensus disorder prediction 217 233 - -
Trre5g05346 540 Pfam Ring finger domain 486 528 IPR001841 -
Trre5g05346 540 MobiDBLite consensus disorder prediction 321 350 - -
Trre5g05346 540 ProSiteProfiles Zinc finger RING-type profile. 487 528 IPR001841 -
Trre5g05346 540 MobiDBLite consensus disorder prediction 172 186 - -
Trre5g05346 540 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 448 534 IPR013083 -
Trre5g05346 540 MobiDBLite consensus disorder prediction 141 165 - -
Trre5g05346 540 MobiDBLite consensus disorder prediction 234 284 - -
Trre5g05346 540 SUPERFAMILY RING/U-box 481 533 - -
Trre5g05346 540 SMART ring_2 487 527 IPR001841 -
Trre5g05346 540 MobiDBLite consensus disorder prediction 27 97 - -
Trre5g05346 540 FunFam E3 ubiquitin-protein ligase arkadia 449 533 - -
Trre5g05346 540 MobiDBLite consensus disorder prediction 104 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05346 Trre-Chr5 54249081 54251415 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05346 367 528 C3H Transcription Factor Family AT2G15530 40.237 2.20e-33 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05346 - - gmx:100819874 765.377
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g00818 1 6206746 6208873 Trre5g05346 5 54249081 54251415 PCT