Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05313 ATGTCGTTGCCATCTCTAGTTAGAAGACGTTCAAGTGGTGAAATAAGGAACTTGGCCTCAATTTCTAGCAGTCTCTTACCAGCATTTGGCACTAGCCCTGATGAAGGTTACTTCAACCTAAAAAAATATACCATTGCTCCCTATGATCGGAGATATCGATTGTGGCAAACGTTCCTAGTGGCATTGGTGATGTACTCAGCATGGGCTTCTCTATTCGAGTTAGCTTTCAGAGAGATGTCAATTGGGTCTCTGTTGGTTGCTGATCTCTTTGTAGATGCCTTCTTTGCATTTGATATAATCCTAACTTTCTTTGTTGCTTACTTAGATACATCAACTTATTACCTCATTGATGACCATAAGAAGATTGCTATCAGGTACGTCAAACATTTACACTTCCCCATGGATCTAGCTTCCACTCTTCCATTTCAGCAGATATACCGACTTCTAGCAGGAAAATCACACGATAGAGGGGATGTCTTTGGTTTTCTAAACATGCTTAGACTCTGGCGATTGAGGCGTGTTAGCGAGCTCTTCTCAAGGCTAGAGAAAGACATAAGGGTTAGCTACTCGGTAACAAGAGTCTGTAAACTTTTATGCGTTACCCTATTTGCAGTGCATTTCACAGGCTGTGTGTACTTTTGGTTGGCTTTCCATCACGAATCACCCGAAAACACATGGATCGGGAAGCAGATAAATGATTTTAAGCATAGGGGCGTCGGGTTGGGTTACACTTACTCCATGTACTGGTCTATTGTAACCCTTAGCACTGTTGGTTATGGAGATTTACATGCAGAAAATACAACAGAGAAGGTTTTCAATATTTTTTATATGTTGTTTAACATCGGCCTCGCCGCATATATTATTGGAAACATGACAAATCTGGTGGTTCATAGCTCTGTCCGAACCTTTGCCATGAGGGATGCCTTCAACAAAATATTACAATATGCGAGCAAAAATGGACTCCCGCAAGGTTTGAAGGATCAAATGTTGGCACATACACAACTGAAGTTCAAGACAGCGGAGTTACAGCAAGAAGAAGTTCTACAGGACCTACCTAAAGCAATTAGAGCTGGCATTGCTCAGCATCTTTTCCACGATGTGGTTGAAAAATCATATTTATTCAAAGGAGTCTCAGATGATTTTATATCCCAGCTGGTATCAGATATGAAAGCAGAATACTACCCATCAAAGGTTGACATTATCTTGCAAAATGAGATGCCAGCATATTTCTACATTTTGGTATCTGGATCGGTGGATGTGTTGATATACAAGAATGGATCTGAACAGTTTTTGTTCAAACTAGACCCTGGAAGCATGACAGGAGAAATAGGTGTGATGTTTAATATCCCACAACCTTATACAGTGAGAAGTAGAAGACTCTCCCAGGTTATACGGATCAACCAACATCATTTCAAGCAGATGGTGAAACCATATAGTGAAGATGGGAAGGCAATCATGAGCAACTTTACTCAGTTTTTGAAGGGGCTAAGAGGCGGGACGCTGGAAGAAATACCAGATGTCACAGATTTCCTGAGTGACCTGCAAGACGAGCAGCAGACACAAAATGAGGGCACAAACAATGAAGATTCAAATTATCGTGAAGAAGATCCATATGATGAAGGACAAACAGAAGATTTCAGTTCACTATCAAGCCTAGTTCCCATTAGAGTCAAAATCTATGGACATCATCCCAATGAAAAAATTGAAAATGGAACAACACCAAAGCTAATTAATCTACCAGATTCAGTCAAAGATCTTTTCAGCGTAGCAGAGAAAAAGTTTGGAGAAAGAGGAAGCAAAATTCTTATGGCTGATGGCTCGGAAGTAGAAGATCTAAGCGCCTTACGAGAGAATGACGAGTTATATATCATCTAA 1875 0.4048 MSLPSLVRRRSSGEIRNLASISSSLLPAFGTSPDEGYFNLKKYTIAPYDRRYRLWQTFLVALVMYSAWASLFELAFREMSIGSLLVADLFVDAFFAFDIILTFFVAYLDTSTYYLIDDHKKIAIRYVKHLHFPMDLASTLPFQQIYRLLAGKSHDRGDVFGFLNMLRLWRLRRVSELFSRLEKDIRVSYSVTRVCKLLCVTLFAVHFTGCVYFWLAFHHESPENTWIGKQINDFKHRGVGLGYTYSMYWSIVTLSTVGYGDLHAENTTEKVFNIFYMLFNIGLAAYIIGNMTNLVVHSSVRTFAMRDAFNKILQYASKNGLPQGLKDQMLAHTQLKFKTAELQQEEVLQDLPKAIRAGIAQHLFHDVVEKSYLFKGVSDDFISQLVSDMKAEYYPSKVDIILQNEMPAYFYILVSGSVDVLIYKNGSEQFLFKLDPGSMTGEIGVMFNIPQPYTVRSRRLSQVIRINQHHFKQMVKPYSEDGKAIMSNFTQFLKGLRGGTLEEIPDVTDFLSDLQDEQQTQNEGTNNEDSNYREEDPYDEGQTEDFSSLSSLVPIRVKIYGHHPNEKIENGTTPKLINLPDSVKDLFSVAEKKFGERGSKILMADGSEVEDLSALRENDELYII 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05313 624 ProSiteProfiles KHA domain profile. 556 624 IPR021789 -
Trre5g05313 624 Pfam Cyclic nucleotide-binding domain 395 476 IPR000595 -
Trre5g05313 624 PANTHER POTASSIUM CHANNEL AKT1 18 494 IPR045319 GO:0005249|GO:0006813
Trre5g05313 624 SMART cnmp_10 373 490 IPR000595 -
Trre5g05313 624 FunFam Potassium channel KAT3 54 297 - -
Trre5g05313 624 ProSiteProfiles cAMP/cGMP binding motif profile. 373 492 IPR000595 -
Trre5g05313 624 SUPERFAMILY cAMP-binding domain-like 302 492 IPR018490 -
Trre5g05313 624 FunFam Potassium channel KAT2 361 497 - -
Trre5g05313 624 Pfam Ion transport protein 53 297 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Trre5g05313 624 PRINTS EAG/ELK/ERG potassium channel family signature 243 260 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trre5g05313 624 PRINTS EAG/ELK/ERG potassium channel family signature 269 280 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trre5g05313 624 PRINTS EAG/ELK/ERG potassium channel family signature 99 108 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trre5g05313 624 PRINTS EAG/ELK/ERG potassium channel family signature 287 296 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trre5g05313 624 PRINTS EAG/ELK/ERG potassium channel family signature 88 98 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trre5g05313 624 Pfam KHA, dimerisation domain of potassium ion channel 556 623 IPR021789 -
Trre5g05313 624 CDD CAP_ED 373 486 IPR000595 -
Trre5g05313 624 Gene3D - 53 297 - -
Trre5g05313 624 SUPERFAMILY Voltage-gated potassium channels 47 295 - -
Trre5g05313 624 MobiDBLite consensus disorder prediction 515 545 - -
Trre5g05313 624 Gene3D Jelly Rolls 338 495 IPR014710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05313 Trre-Chr5 53988019 53994230 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05313 8 623 Ion Channels AT4G32650 58.587 0.0 697
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05313 K21867 - gmx:100794620 901.738
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05313 5 53988019 53994230 Trre5g05313 5 53988019 53994230 ECH