Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05310 ATGGCAGTGAAACCTACAAAAGCTGAGAAGAAGCAGAATTACGATGCTAAACTCTGCAAACTTCTCGATGAATTCACCCAAATCCTTGTTGTTAATGCTGACAATGTTGGATCAAATCAGTTACAGAGTATTCGTAGAGGTTTACGTGGTCACTCAATTGTTCTCATGGGGAAGAATACCATGATGAAACGTTCTGTTCGTATTCATGCTGAGAATACCGGAAACAATGCTTTTCTTAACCTCATTCCTCTTCTTGTCGGAAATGTAGGTTTGATTTTCACAAAAGGTGACTTGAAGGAAGTTAGTGAAGAGGTTGCTAAGTACAAGGTTGGAGCTCCTGCTCGTGTTGGTTTGGTTGCGCCAATTGATGTCATTGTTCAACCAGGCAACACAGGGCTAGACCCCTCTCAGACCTCTTTTTTCCAGGTGCTCAACATTCCAACCAAGATTAACAAGGGTACTGTGGAAATCATTACCCCTGTGGAACTTATCAAGAAAGGAGACAAGGTTGGATCTTCTGAAGCTGCCTTGCTTTCCAAGTTAGCCATTAGGCCCTTTTCATATGGGCTCGTCGTCCTCTCTGTCTATGATAATGGTTCAGTGTTTAGCCCCGAGGTTCTTGACCTTACTGACGATGACCTTGTTGCGAAGTTTGCTAATGGTGTGTCAATGGTTGCTTCACTTTCATTGGCCATCTCCTACCCAACACTTGCAGCTGCCCCCCATATGTTTGTCAATGCATACAAGAATGTTCTTGCACTTGCTGTTGTTACAGAATATTCTTTCCCTGAGGCAGACAAGGTTAAGGAGTACCTGAAGGACCCGAGTAAATTTGCCGTAGCTGCAGTTGCTGCCCCAGCTGCTGCTGCTTCTGGTGGTGCCCCTGCTGCTGCCAAGGAGGAGGCAAAGAAGGAAGAGCCCGAAGAAGAGTCTGATGACGACATTGGTATGGGTCTGTTTGGTGATGATTAG 972 0.4527 MAVKPTKAEKKQNYDAKLCKLLDEFTQILVVNADNVGSNQLQSIRRGLRGHSIVLMGKNTMMKRSVRIHAENTGNNAFLNLIPLLVGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVIVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLSKLAIRPFSYGLVVLSVYDNGSVFSPEVLDLTDDDLVAKFANGVSMVASLSLAISYPTLAAAPHMFVNAYKNVLALAVVTEYSFPEADKVKEYLKDPSKFAVAAVAAPAAAASGGAPAAAKEEAKKEEPEEESDDDIGMGLFGDD 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05310 323 CDD Ribosomal_P0_L10e 9 185 - -
Trre5g05310 323 MobiDBLite consensus disorder prediction 306 323 - -
Trre5g05310 323 Pfam 60s Acidic ribosomal protein 234 320 - -
Trre5g05310 323 MobiDBLite consensus disorder prediction 292 323 - -
Trre5g05310 323 FunFam 60S acidic ribosomal protein P0 113 186 - -
Trre5g05310 323 Gene3D - 114 185 IPR043164 -
Trre5g05310 323 PIRSF L10E 1 321 IPR030670 GO:0042254
Trre5g05310 323 Pfam Ribosomal protein L10 7 108 IPR001790 -
Trre5g05310 323 SUPERFAMILY Ribosomal protein L10-like 8 134 IPR043141 -
Trre5g05310 323 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P0 4 304 - -
Trre5g05310 323 Pfam Insertion domain in 60S ribosomal protein L10P 114 183 IPR040637 -
Trre5g05310 323 Gene3D - 6 209 IPR043141 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05310 Trre-Chr5 53958955 53961056 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05310 1 321 Cytoplasmic Ribosomal Protein Gene Family AT2G40010 80.374 0.0 503
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05310 K02941 - jre:108991896 513.072