Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05307 ATGGATAATTTAGACGATTTGTCAGCGGTTAATTCAGAAGATGATAGAGATTTTAATGATTTGTGTGATCAGAATGAAAGTGTAAAAATGAATTTGGGTGTTGACGACGGTAAATATAAAAAGATTACCAGCTTAACAGCTGATGAGATACAAGGTCTAGAGTTTGATAGTGAACAAGAAGCTTATGACTTTTATTGTGAATATGCAAGATGGCATGGTTTTGTTGTTAGGAAAGATGAGGTGACTCGTGATGATGATGGGAAAGTAATAATGCGTCAGTTTGTATGCAATAGAGAAGGGTTTAGTCACAAAAAACAATTAACAAGACCTAACGGTCGAACTAATTGTCAAGCTAGGCTTCGTGTACGCTACAGTTTGAAAGCATCAAAATGGAAAGTGAAATGTTTTGAAGAGGTTCATAACCATGAACTAGCTCCTTCAAGATATACACACTTGGTAGCTTGCCGTGGAATGAAGGATGTGGATAAAGCTCAGGCTGATAGTTTGAATGATGTTAGAACTGGTTATATAATGGGGTACATGGTGGCTCAAAAGGGTGCATCTGTTGGTTTTCGTTTTTCAAAGAAAAATCTATACAACGGTTTTGATAGCAAAGTCCGTGGCGAGATTAAAGATGGAGATGTTGTTGCTGCCTTAAGTTATCTTAGTGGGAAGGCAAGCAATGATCCTATGCTATATGCAAAATTTACAACTACTGGTGATGGTAAATTGCAGCAGCTTTTTTGGGCAGATGGACGTAGCATATCTGATTTTCTATGTTTCAATGATGTTCTTGCACTTGACATGACACACGAGAAGAACGGATACAATTTTCCTTTGATAATTTTCTCCGGGTGCAATCATCATTCTCAAACAATTATATTTGGTTGTGCTTTGGTGTCGGATGAAACAATTGGGACATATAAGTGGGTCTTAAAATCTTTTTCAGAAGCAATGCTAAACAAACATCCCAAAGTTGTTGTGACAAATGGGGATGAGGTTATGATGGAGGCTATAAAGCATGCTTTTCCAGATTCGTGTCATCGACTATGTGTTTGGAACTTGCACAAGAATGCATGTAAAAATGTCGAGAGTTCTTCATTTTCGGAGGATTTCAAAAAGGCAATTTACTCAAATTTCACTCCAAAAGAATTTGAAGATTTTTGGATAAAGATGGTTGCAGGGCACAGAATTGTTGGGAATGAGTGGGTTTCTAAAACCTATGAGAATAGGTCATTGTGGGCCACTGCATACCTCCGTGATAAGCTTTTTGGTCGTATACAGACTACATGTCATCGTGAAACTATTGACTCAATCATCAAGAAATATATAAGGAAGAAAAGTAGTGTTTTCGAGTTTATGCATGATTTTGGGGAGACTTTGAGAAAATATAGAAACGATGAACTGATGGCTGATAATAAGTCTTTATTTTCAGAACCTGTGTTGACCACGCCTCTTCCAGAATTTGAGAAAGATGCTGCAAAAATTTACACAGCAGAGCTTTTTAAAGAAGTTAAAGAGCAGATTGTATTGGCTGGTGCGTTAAATGCTATTAAGCGAATGGTAAATGGGGAGAAGGTTATCTTTAAGATAACCAAGTATGGTCATCCCGGTATTGAAACAAAAGTTGTTTATGATACTTCAAAGTCAGCATTTTATTGCGTGTGTAGACATTTTGAGGCTCGTGGCATTCCGTGTTCGCATATTTTTCGTGCCATGATATTTGAGCATGTGGACCATATTCCAAGCAGTTTGATTTTGACACGGTGGACTAAGAATGCTAAGATTGCCTTACTGTCATCGAATTCAATGGATGGAATAGATTATGATGTGATGGAGTTTGCTCAGTTTGCAGCCGATGCTGCTTTTACTAGGTTGTGGCATGTAGCCTTAAAAAATAAGGAACACTACAATGAGATCATGGATGACATATTGAATCTTACTAACAAGTATAGGAAGATGAACGCTCTCGTTGACATACAAAGCTCGTCATCAGAGCACATTGGTGATCCCAACATAGATAAGACCAAAGGTACTCCCAAGAATAAAAAGTTTGGCATGAAGAGGGCAAGTCATAGTTCAAATCGTAATAGCACAAAAGGCAATGTTAAAACATGTTCAATGCATGTTTGTTTAAATGGTAATAGTATGAATGATGATCAATTTTCTCATCCAGAGTCTTCTAAATTCAGCACGACAACCGATAGTGATAAAGAAATGTTGGCATCTGATGTAAACTTGCAGGATAAAGAAATATTGGCATCTGATGTAAACAATGGTTGTGACACTTACGATAAACTTAGTGAATGCTGTAATCAGAAGCAAAAGAAAGCAAATGAGTTGACACAAAAATCAAAGAATGACGGTACAATTTTACAGGCTGGTTATTCTAGTGGAGTTCACCATGTTAATTCCAAAATGCAGTTTATATTACCTAAAATGCAATCCTCACCATACGGTTATGTCACTCCGAGCCATGGATGGTGGAACTTGCCCAATTATAGTGGAGTTCCTATTTTACCACATTATTATTATTATAGAGTGCCGGTTAGTAATAGTGACACACCTCAAATGGGATTGCTACCAGAAGCCTTGAAAAATAATGGTCAAACAAGTGGAAATGGTGTTCAACCTCAGTAG 2640 0.3731 MDNLDDLSAVNSEDDRDFNDLCDQNESVKMNLGVDDGKYKKITSLTADEIQGLEFDSEQEAYDFYCEYARWHGFVVRKDEVTRDDDGKVIMRQFVCNREGFSHKKQLTRPNGRTNCQARLRVRYSLKASKWKVKCFEEVHNHELAPSRYTHLVACRGMKDVDKAQADSLNDVRTGYIMGYMVAQKGASVGFRFSKKNLYNGFDSKVRGEIKDGDVVAALSYLSGKASNDPMLYAKFTTTGDGKLQQLFWADGRSISDFLCFNDVLALDMTHEKNGYNFPLIIFSGCNHHSQTIIFGCALVSDETIGTYKWVLKSFSEAMLNKHPKVVVTNGDEVMMEAIKHAFPDSCHRLCVWNLHKNACKNVESSSFSEDFKKAIYSNFTPKEFEDFWIKMVAGHRIVGNEWVSKTYENRSLWATAYLRDKLFGRIQTTCHRETIDSIIKKYIRKKSSVFEFMHDFGETLRKYRNDELMADNKSLFSEPVLTTPLPEFEKDAAKIYTAELFKEVKEQIVLAGALNAIKRMVNGEKVIFKITKYGHPGIETKVVYDTSKSAFYCVCRHFEARGIPCSHIFRAMIFEHVDHIPSSLILTRWTKNAKIALLSSNSMDGIDYDVMEFAQFAADAAFTRLWHVALKNKEHYNEIMDDILNLTNKYRKMNALVDIQSSSSEHIGDPNIDKTKGTPKNKKFGMKRASHSSNRNSTKGNVKTCSMHVCLNGNSMNDDQFSHPESSKFSTTTDSDKEMLASDVNLQDKEILASDVNNGCDTYDKLSECCNQKQKKANELTQKSKNDGTILQAGYSSGVHHVNSKMQFILPKMQSSPYGYVTPSHGWWNLPNYSGVPILPHYYYYRVPVSNSDTPQMGLLPEALKNNGQTSGNGVQPQ 879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05307 879 Pfam MULE transposase domain 264 358 IPR018289 -
Trre5g05307 879 ProSiteProfiles Zinc finger SWIM-type profile. 539 577 IPR007527 GO:0008270
Trre5g05307 879 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 49 642 IPR031052 GO:0006355
Trre5g05307 879 SMART 26again6 552 579 IPR006564 GO:0008270
Trre5g05307 879 MobiDBLite consensus disorder prediction 859 879 - -
Trre5g05307 879 Pfam FAR1 DNA-binding domain 63 145 IPR004330 -
Trre5g05307 879 Coils Coil 764 784 - -
Trre5g05307 879 MobiDBLite consensus disorder prediction 664 701 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05307 Trre-Chr5 53944345 53947528 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Trre5g05307 MULE 1.2e-21 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05307 - - ccaj:109792835 978.778