Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05306 ATGCAGTTCAAATCAACACAATCCTCATTTCGAGATCGTACACATGAATTCCACACCGTTGCTGAGAGATTGAAGAAATCACTATCATCAGGATCAGGTTCAAATGGACCAAGCAGTAGTAGTTCTCCTTATCCTTCTTCCTCTACTCCTTCTTCTTCATCTTCCAGATCGGAGGATCCCCGATCTGCCGTCGCAATTCAATCGGAATTTAATCGAAGAGCTTCCAAGATTGGCTTTGGAATTCATCAAACCTCTCAGAAACTTTCCAAGCTCGCCAAATTGGCGAAAAGGACTTCTGTTTTTGATGATCCAACCATGGAAATTCAAGAATTAACAAGTGTTATTAAGCAAGATATTACTGCACTTAACTCTGCGGTTGTGGATCTTCAATTAATCAGCAATTCAAGAAATGAGAGTGGAAATGTTTCTACCGACACAACTAGCCATTCAACTACGGTTGTCGATGATCTAAAGACTCGATTGATGAGTACTACCAAAGAGTTTAAAGATGTTCTCACAATGCGAACTGAGAACTTGAAAGTGCATGAGAATAGAAGACAATTGTTTTCGGCAAATGCTTCTAAGGATAATGCAAATCCTTTCATCCGTCAACGTCCATTAGCTACAAAATCGGCTGCTAGTGCTTCTAATGCGCCTGCACCTCCATGGGCTAGTGGGAAGCAGGTGGAAGGAGAGAGTCAACCGTTGCTGCAACAACAACAACAACAACAGGAGCAGCAGATGGTTCCATTGCAGGACAGTTACATGCAAAGCAGAGCTGAAGCTCTTCAAAATGTTGAGTCCACTATTCATGAGCTCAGCAACATCTTCAATCAACTAGCAACACTTGTCTCCCAGCAAGGGGAGGTTGCCATCAGGATTGATGAGAACATGGATGATACATTGGCAAACGTAGAGGGGGCACAAGGGGCTCTGTTAAAGTATTTGAATAGCATATCTTCTAATAGGTGGCTGATGATCAAGATTTTCTTTGTACTGATGTTTTTCCTTATGGTTTTCTTATTTTTTGTGGCATAG 1038 0.4171 MQFKSTQSSFRDRTHEFHTVAERLKKSLSSGSGSNGPSSSSSPYPSSSTPSSSSSRSEDPRSAVAIQSEFNRRASKIGFGIHQTSQKLSKLAKLAKRTSVFDDPTMEIQELTSVIKQDITALNSAVVDLQLISNSRNESGNVSTDTTSHSTTVVDDLKTRLMSTTKEFKDVLTMRTENLKVHENRRQLFSANASKDNANPFIRQRPLATKSAASASNAPAPPWASGKQVEGESQPLLQQQQQQQEQQMVPLQDSYMQSRAEALQNVESTIHELSNIFNQLATLVSQQGEVAIRIDENMDDTLANVEGAQGALLKYLNSISSNRWLMIKIFFVLMFFLMVFLFFVA 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05306 345 MobiDBLite consensus disorder prediction 9 23 - -
Trre5g05306 345 ProSitePatterns Syntaxin / epimorphin family signature. 259 298 IPR006012 GO:0005484|GO:0006886|GO:0016020
Trre5g05306 345 FunFam Syntaxin-32 like 64 308 - -
Trre5g05306 345 CDD SNARE_syntaxin5 256 329 - -
Trre5g05306 345 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 8 26 IPR021538 -
Trre5g05306 345 MobiDBLite consensus disorder prediction 25 63 - -
Trre5g05306 345 MobiDBLite consensus disorder prediction 231 249 - -
Trre5g05306 345 MobiDBLite consensus disorder prediction 1 63 - -
Trre5g05306 345 MobiDBLite consensus disorder prediction 208 249 - -
Trre5g05306 345 Gene3D - 63 308 - -
Trre5g05306 345 SUPERFAMILY t-snare proteins 68 308 IPR010989 GO:0016020|GO:0016192
Trre5g05306 345 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 253 315 IPR000727 -
Trre5g05306 345 SMART tSNARE_6 248 315 IPR000727 -
Trre5g05306 345 Pfam SNARE domain 290 341 IPR000727 -
Trre5g05306 345 PANTHER SYNTAXIN 67 333 IPR045242 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05306 Trre-Chr5 53935987 53939210 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05306 1 345 SNARE and Associated Proteins AT3G24350 62.133 2.40e-145 413
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05306 K08490 - gmx:100777961 470.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05306 5 53935987 53939210 Trre5g05306 5 53935987 53939210 ECH