Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05296 ATGCATATTGCATACAGATTAGAAGAGGTTAAAATTTCAAGAACTTATGTTCCTGATTTTAAGAAAGATGGTTTGATGGAAACTCATGATCAAGAAACTGGAGAGTATTTTAGAAACGCAAATGTTCATTGCATTTTGTGTCCGCATAATCCTAGTCATGGAAGAAGCATAATTCAAGGATTTGAAATTTCAACCATGTTCACTAATCATCAAAAGACTACAATTTTTTACAGTAGGGTTGTTGGTTCTGGACAATGGAATAAGAGAACAATCACAAGTTTTGTTGGTGGGATTGATTTGTGTGATGGAAGATATGATACCATGGAACATCCTTTGTTTTCAACTTTGCACACTTTAAGGTCCCTAGCCAACACCACCAAGTCAACCCAATTTGGGACTTGA 402 0.3557 MHIAYRLEEVKISRTYVPDFKKDGLMETHDQETGEYFRNANVHCILCPHNPSHGRSIIQGFEISTMFTNHQKTTIFYSRVVGSGQWNKRTITSFVGGIDLCDGRYDTMEHPLFSTLHTLRSLANTTKSTQFGT 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05296 133 Pfam Phospholipase D Active site motif 65 104 IPR001736 GO:0003824
Trre5g05296 133 PANTHER PHOSPHOLIPASE D 17 119 IPR015679 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05296 Trre-Chr5 53877200 53877601 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05296 20 121 Phospholipase D Gene Family (Wang group) AT5G25370 63.725 2.70e-41 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05296 K01115 - gmx:100791688 161.384