Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05291 ATGGGTGTGGATTATTATAATATATTGAAGGTAGATAAAAATGCTACAGAAGATGATTTGAAGAAAGCATATAGAAAATTGGCTATGAAATGGCACCCTGACAAGAACCCTACCAACAAAAAAGAAGCTGAAGCCAATTTCAAACAAATCTCTGAGGCTTATGCGGTATTGAGCGACCCTAAGAGAAGAATTGTTTATGATCAGCTTGGAGAACAAGGGTTACATGATAGGCCACCACAAGAAAATGAATCATCAAGTGGGAATAATCCAAGAAGTGCAGAGGATATCTTTGCAGAATTCTTTGGAAGTAGTCCTTTGAATTTTGGATCATCTGGGCTAGGGAGGTCTCAGAGATTTCCATCTGATGGTGGTGGTGGAGGTGCATTTGGTGGATTCAGTGGAGATTTTAATTTTAGAAAACATAGTGAAAGACCGAATACGCCGAAGAAACCACCGCCTGTGGAGACCAAATTGCCTTGTAGTTTGGAGGAGTTGTATTCCGGTTCTACACGGAAAATGAAGATCTCACGGACAGCATTTGATGCTTGCGGAAGGGAAGTTAAAGAAACTGAGATATTAAGCATTGGAGTAAAGCCAGGATGGAAAAAAGGAACAAAGATTACATTCCCAGATAAAGGAAATCAGCAATTAAATCAACTTCCAGCTGATCTTGTATTTGTGATTGATGAGAAACCTCATGAATTATTCAAGAGAGATGGGAATGACTTAATTGTGAATCAAAAGATAACACTAGCAGAAGCTATTGGAGGAACTTCAGTAAATCTTAGAACACTCGACAAACGTAGTTTACCTGTTCCAGTTAAAAACATTGTGAGTCCTGGTTATGAACATGTTGTTTCTAATGAAGGGATGCCAATAACAAAGGAACCTGGTCATAGGGGTGATTTAAGGATCATATTTGAGGTTAAGTTCCCTACAAAATTGACACCTGAACAACGTGCTGGACTAAAGAGAGCATTGAGAGGTTGA 990 0.3899 MGVDYYNILKVDKNATEDDLKKAYRKLAMKWHPDKNPTNKKEAEANFKQISEAYAVLSDPKRRIVYDQLGEQGLHDRPPQENESSSGNNPRSAEDIFAEFFGSSPLNFGSSGLGRSQRFPSDGGGGGAFGGFSGDFNFRKHSERPNTPKKPPPVETKLPCSLEELYSGSTRKMKISRTAFDACGREVKETEILSIGVKPGWKKGTKITFPDKGNQQLNQLPADLVFVIDEKPHELFKRDGNDLIVNQKITLAEAIGGTSVNLRTLDKRSLPVPVKNIVSPGYEHVVSNEGMPITKEPGHRGDLRIIFEVKFPTKLTPEQRAGLKRALRG 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05291 329 PRINTS DnaJ domain signature 6 24 IPR001623 -
Trre5g05291 329 PRINTS DnaJ domain signature 62 81 IPR001623 -
Trre5g05291 329 PRINTS DnaJ domain signature 24 39 IPR001623 -
Trre5g05291 329 PRINTS DnaJ domain signature 42 62 IPR001623 -
Trre5g05291 329 Pfam DnaJ C terminal domain 154 312 IPR002939 -
Trre5g05291 329 MobiDBLite consensus disorder prediction 112 157 - -
Trre5g05291 329 FunFam DnaJ subfamily B member 13 233 313 - -
Trre5g05291 329 FunFam Dnaj homolog subfamily b member 149 231 - -
Trre5g05291 329 SUPERFAMILY HSP40/DnaJ peptide-binding domain 236 321 IPR008971 GO:0006457|GO:0051082
Trre5g05291 329 Gene3D DnaJ domain 3 110 IPR036869 -
Trre5g05291 329 CDD DnaJ 4 59 IPR001623 -
Trre5g05291 329 SMART dnaj_3 3 62 IPR001623 -
Trre5g05291 329 SUPERFAMILY Chaperone J-domain 3 108 IPR036869 -
Trre5g05291 329 Gene3D - 153 231 - -
Trre5g05291 329 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Trre5g05291 329 CDD DnaJ_C 152 315 - -
Trre5g05291 329 MobiDBLite consensus disorder prediction 71 92 - -
Trre5g05291 329 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Trre5g05291 329 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 327 - -
Trre5g05291 329 Gene3D - 232 328 - -
Trre5g05291 329 SUPERFAMILY HSP40/DnaJ peptide-binding domain 153 234 IPR008971 GO:0006457|GO:0051082
Trre5g05291 329 Pfam DnaJ domain 4 67 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05291 Trre-Chr5 53846175 53848099 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05291 5 74 C2H2 Transcription Factor Family AT1G74250 39.189 1.57e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05291 K09510 - gmx:100796426 499.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05291 5 53846175 53848099 Trre5g05291 5 53846175 53848099 ECH