Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05289 ATGGCAAATCCTACTCAGCATGTCATCATTGATATAACAACTTCAACTTCTGAAAATGCTTCTCATGTTATTGGGGCAGAAGATTTAGGTGGTGGTGGTGGTGGTGGTGGTAGATTACGTGTTTCTCATCAAACTCCAAATGGGTCAAATTCTAGGTTGATTAGAGGAGATTCATTGTCACGAGGAGGACGTCGTAGGGGTCTTCTGAATTCGGGGTTTTGGATTTCTTTCCAATTTGTTTTCACATTAACTCAAATTATTGCTTCTTTTGTTGTTATTTCTTCGTCAAGACATGAACATCCACAAGCTCCATTGTTTACTTGGATTGTTGGTTATGTTATTGGGTGTATTGTTTCTCTCCCTTTGGTCATTTGGCGTTATTATTATACTAGAGAACGATATTTGTCTCAAAGTAATTCTACCATTGATGATCCTTCTGGTACACTTCTTTCAAATTCCACCACAATTCAAGGTGAAGATGATGTTCCTGTTGTTGTTGAGGCTTCCTCCAGAACCAATCAAGTTTCATCATGGTTGATGAATCAGAGACTAAAGATACTCATGGAATACTTAAAAATCGTCGTAGATATATTTTTTGCAATATGGTTTGTTATTGGAAATATATGGATTTTCGGAGGACACTCGTCCGCTAATGAAGCGCCTAACTTGTACCGGTTATGTGTAGTGTTTCTTACTCTTAGTTGTATCGGTTACGCAATGCCCTTCATTCTATGTTTAACAATTTGTTGCTGCCTTCCATGTATAATATCCACTCTTGGAGTCACAGAGGATGTAGCGCAAACTCGAGGTGCAACCCCTGAGACTATTAATGCTTTACCAACTCATAAATTCAAAATGATAAAAAGTAAAAACGAAGATGAAAACAGTCCAACAACCATTGAAGGTGGAATTGTAGCCGAAGGAACTGAAAATGAGCGCATGATATCTGGAGAAGATGCTGTTTGCTGCATATGCATAATGAACTATGAAAATGAAGATGAATTGAGAGAGTTGCCATGTACACATCTTTTCCACAAAGAGTGTGTAGACAAGTGGTTGAAGATAAGTGCATTGTGCCCCCTTTGCAAGAGTGAAGTTGGTGGGGATGCAACAGGAATACTCAACGAGGAAAATTCCACCCAACAAAGGGGTGAGATCAGGGTTGAGAATGACCTTGCCAATACCTCGTTGTAA 1194 0.3911 MANPTQHVIIDITTSTSENASHVIGAEDLGGGGGGGGRLRVSHQTPNGSNSRLIRGDSLSRGGRRRGLLNSGFWISFQFVFTLTQIIASFVVISSSRHEHPQAPLFTWIVGYVIGCIVSLPLVIWRYYYTRERYLSQSNSTIDDPSGTLLSNSTTIQGEDDVPVVVEASSRTNQVSSWLMNQRLKILMEYLKIVVDIFFAIWFVIGNIWIFGGHSSANEAPNLYRLCVVFLTLSCIGYAMPFILCLTICCCLPCIISTLGVTEDVAQTRGATPETINALPTHKFKMIKSKNEDENSPTTIEGGIVAEGTENERMISGEDAVCCICIMNYENEDELRELPCTHLFHKECVDKWLKISALCPLCKSEVGGDATGILNEENSTQQRGEIRVENDLANTSL 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05289 397 FunFam E3 ubiquitin-protein ligase 305 372 - -
Trre5g05289 397 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 304 369 IPR013083 -
Trre5g05289 397 Pfam Ring finger domain 322 363 IPR001841 -
Trre5g05289 397 CDD RING-H2_PA-TM-RING 321 363 - -
Trre5g05289 397 SMART ring_2 322 362 IPR001841 -
Trre5g05289 397 SUPERFAMILY RING/U-box 314 367 - -
Trre5g05289 397 ProSiteProfiles Zinc finger RING-type profile. 322 363 IPR001841 -
Trre5g05289 397 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 6 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05289 Trre-Chr5 53833216 53835830 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05289 55 372 C3H Transcription Factor Family AT1G80400 51.084 2.19e-117 346
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05289 - - gmx:100775815 454.136