Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05287 ATGAATAAAGCAAAGAGTAGTACTTTGTGTGCCAAAGATGAAGAGCGTCCACTCAGAATCACTAGATCAAGAGCAAGAGTTTTGGAATCCTCATCCAAAAATGTTAACATAGTAGAATGTTCCAATAAGGTTGTTTCATCTGAGAATAAAACATGTGTTGTTGATGTTCCTAATGTTCCTCACCGTAAGAGAAGGGCAGCTTTTACTGATGTAACTAACATCACCACAAAACCACATGATAAACGTGTTAAACATTCTAAACTTCAGGCCAAAGGAGTTTACCAGAAGAAAAACACAAAGCTAACTTCAGATGTTGTTACCATCGAAGTTTCATCAGCACAAGAGGATGTTAAAGGGAAGTTAACTAAAGAGTTGTCTACCATAAAGATGGTAGAGTCAAATGATACCATTGCTGCAGTAACTTTGGTTCATGAACCAGATGAACAATGTATGTCCAACAACATAACAGAACATGTTATGACAGACATCGCGCTTTCAATGCAAGGATCTGTGAATGCTGGTGAACTGTCAATAATCTCTCCTAGTCCAAACAAAGATATAAATATGATTTGTGAGAAGCTAGGAGCCTCAAATTGTCTGACCATTGTGGACATTGATAAAGAGTTAAAGGATTCTGAAGTTTGGAGTGTTTATGCCCCTGATATATACAGCAAAGTTCGAGTCGCCGAGCTTGAAAGGAGACCATCAACCAATTACATGGAGAAGTTGCAGCAAGATATTTCTCCAAGCATGCGCGGAATTTTGATTGATTGGCTTGTGGAGGTTACTGAGGAATATAAGTTGGTTCCGGACACTCTTTACCTTACTGTGAACCTCATCGATCGGTTTCTCTCAACAAAATTGATTCAGAAACACAGGCTCCAGTTGCTTGGTATTACTTGCATGTTCATTGCATCAAAGTACGAAGAGATATGTGCTCCTCGAGTGGAAGAATTTTGCTTCATCACAGATAATACATACACAAAACAAGAGGTAGTGAAAATGGAGAAAGAAGTTCTAAACCTTCTGCGTTTTCAGTTATGTGTTCCTACAACCAAAACATTTCTCAGGAGATTCATCCAAGCAGCACAATCTTCTTACAAGGATCCTCGCATTGAACTAGAATTCCTAGCAAACTATTTAGTCGAGCTTACTCTTGTCGAATACAGCTTCTTACAGTTTCTACCTTCTCTTGTGGCTGCTTCTGCTGTATTCCTTGCTAGATGGACTCTCAACCACTTAGAACACCCTTGGACTCCGACACTGGAGCATCATACAAACTACCGAGCTTCAGAGCTAAAAACAGTTGTTCTTGCATTGGAGAATCTGCAACTTAATACCAAAGGCTGTTCTCTCCATGCTATACGTGAGAAATATAAGCAAGAGAAGTTCAATTGTGTAGCAAAACTGTCTCCAAAACCGGTGCAGTCACTGTTCCAAGTTCAAGTGTAA 1452 0.3946 MNKAKSSTLCAKDEERPLRITRSRARVLESSSKNVNIVECSNKVVSSENKTCVVDVPNVPHRKRRAAFTDVTNITTKPHDKRVKHSKLQAKGVYQKKNTKLTSDVVTIEVSSAQEDVKGKLTKELSTIKMVESNDTIAAVTLVHEPDEQCMSNNITEHVMTDIALSMQGSVNAGELSIISPSPNKDINMICEKLGASNCLTIVDIDKELKDSEVWSVYAPDIYSKVRVAELERRPSTNYMEKLQQDISPSMRGILIDWLVEVTEEYKLVPDTLYLTVNLIDRFLSTKLIQKHRLQLLGITCMFIASKYEEICAPRVEEFCFITDNTYTKQEVVKMEKEVLNLLRFQLCVPTTKTFLRRFIQAAQSSYKDPRIELEFLANYLVELTLVEYSFLQFLPSLVAASAVFLARWTLNHLEHPWTPTLEHHTNYRASELKTVVLALENLQLNTKGCSLHAIREKYKQEKFNCVAKLSPKPVQSLFQVQV 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05287 483 SMART Cyclin_C_2 350 473 IPR004367 -
Trre5g05287 483 SUPERFAMILY Cyclin-like 349 472 IPR036915 -
Trre5g05287 483 PANTHER CYCLINS 181 465 IPR039361 -
Trre5g05287 483 Pfam Cyclin, C-terminal domain 350 472 IPR004367 -
Trre5g05287 483 PIRSF Cyclin_A_B_D_E 19 482 IPR046965 GO:0016538|GO:0044772
Trre5g05287 483 Gene3D - 221 469 - -
Trre5g05287 483 Pfam Cyclin, N-terminal domain 221 348 IPR006671 -
Trre5g05287 483 ProSitePatterns Cyclins signature. 252 283 IPR006671 -
Trre5g05287 483 SMART cyclin_7 354 442 IPR013763 -
Trre5g05287 483 SMART cyclin_7 257 341 IPR013763 -
Trre5g05287 483 CDD CYCLIN_AtCycA_like_rpt1 211 346 - -
Trre5g05287 483 Gene3D - 235 348 - -
Trre5g05287 483 CDD CYCLIN_AtCycA-like_rpt2 350 464 - -
Trre5g05287 483 FunFam Cyclin A1 337 469 - -
Trre5g05287 483 SUPERFAMILY Cyclin-like 214 348 IPR036915 -
Trre5g05287 483 FunFam Mitotic cyclin 6 235 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05287 Trre-Chr5 53817222 53821318 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05287 2 479 Core Cell Cycle Gene Families AT5G25380 49.064 5.79e-142 413
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05287 K06627 - gmx:547780 628.246