Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05283 ATGGCGATGCTGAGAATGGTTCATTCAAACTCACAGTCTCACCATAACAACAACAATGACAACAACACTCACTTGCTCAAGCCAGTACTCCGTGATTTTCTCGGCATGAAACCTACTGATACTCCCACCGACCTTAGGTTACCGGAGGCATCAGCTTCAGCTTCCTCCGCCGGTGCTCGTGGCCCTTTCTCCTCCACTTCTGAAACCGCTTCTGAAAAGCAGGTATCGAATCATCTCGAGGGAGTTCCATACTATGGTCCAAGAAGTGATTTTTCTGGCACTGAGATAAGTAATAGATTAGTGGGGAATAAGAGAAGTAATTCTGATTCTTCATTTATGGGTTCCTCTAGAGATGCCTTTCAAATGGTCCCTGATTCCTTCCAAAACTCACATTTCATGAAGGTCCTCCGTAATGCGTCTGGAGGAGAAAGGTCTAGAAGGACTAATGATGATGAAGTGTTGCTTAGTATGCAGTCAATGAAGCCATCTTCTAGTTCTCAGATATTTCATCCTCCCGCCAACACTAAGTTTGATGCGAATAAATGGGAAAGGTCTATTCTCATGAATGCTGGCCCTTCCGTACAGCATCCTCTGCGTGGAGGACAGTTGACTCCTTTTGCACACCAATTAGCTTCAAACAAGATTAGAGATGCCAATGCCGGCCCTTCATTTATCTCTCAGTCTGCCGCTGATGAAGGATCAAGAACTGGAATCAAGGGTCCTGGAATTTTAAGTTCCATAAACACAGGTGCTACTGCTACTGAGAAAATTTCGTCTTCTGTGTTGGTTGGTGGAAGCAGGCCAAAGCTTCTAACTAATATAGTAGAATCCTCCACACCCCCAAGCAGTCAACATGGGCTAACACCTACCACCCGCCAGATGACTATCTTTTACGGAGGTCAAGCTCATGTTTTTGATGATGTTCACCCAAACAAGGCAGATGTTATAATGTCTTTGGCTGGATCAAATGGAGGATCTTGGTCAACAACATTCTCGCCGAAATCTGCTGCAAAGTTGGTTAATGATAGTAACTTGCATAGTGGAGAAAATGAAACAGGATTAGTGAGTAACATGGCATTCCAGCAAGAGCTTCATGGGAAGCTGTCTGTTACTGGCAGTTCTAGTCGTGCCGTTGGGCCTGGTGATCGTGTGTCTAATCTAGCTGGGGCACACCAAGGAAGCATTTTTGCCAAAGATACGAGAAATCCGGTTCAACCAGCTAATCCCAGTTCCGAAGACAAAAGACCACAGTGA 1254 0.4514 MAMLRMVHSNSQSHHNNNNDNNTHLLKPVLRDFLGMKPTDTPTDLRLPEASASASSAGARGPFSSTSETASEKQVSNHLEGVPYYGPRSDFSGTEISNRLVGNKRSNSDSSFMGSSRDAFQMVPDSFQNSHFMKVLRNASGGERSRRTNDDEVLLSMQSMKPSSSSQIFHPPANTKFDANKWERSILMNAGPSVQHPLRGGQLTPFAHQLASNKIRDANAGPSFISQSAADEGSRTGIKGPGILSSINTGATATEKISSSVLVGGSRPKLLTNIVESSTPPSSQHGLTPTTRQMTIFYGGQAHVFDDVHPNKADVIMSLAGSNGGSWSTTFSPKSAAKLVNDSNLHSGENETGLVSNMAFQQELHGKLSVTGSSSRAVGPGDRVSNLAGAHQGSIFAKDTRNPVQPANPSSEDKRPQ 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05283 417 MobiDBLite consensus disorder prediction 371 417 - -
Trre5g05283 417 SMART tify_2 287 322 IPR010399 -
Trre5g05283 417 MobiDBLite consensus disorder prediction 1 113 - -
Trre5g05283 417 MobiDBLite consensus disorder prediction 57 76 - -
Trre5g05283 417 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 91 359 IPR040390 -
Trre5g05283 417 Pfam tify domain 289 321 IPR010399 -
Trre5g05283 417 ProSiteProfiles Tify domain profile. 287 322 IPR010399 -
Trre5g05283 417 MobiDBLite consensus disorder prediction 398 417 - -
Trre5g05283 417 MobiDBLite consensus disorder prediction 1 25 - -
Trre5g05283 417 MobiDBLite consensus disorder prediction 91 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05283 Trre-Chr5 53785869 53789583 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05283 27 320 Tify Gene Family AT4G32570 40.193 5.14e-50 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Trre5g05283 tify 1.7e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05283 - - gmx:100819293 615.15