Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05278 ATGTCTCAGACTAACTGGGAAGCTGATAAGATGTTAGATGTTTACATTCATGATTACCTAGTTAAGAGGGATTTGAAGGCTTCTGCTCAAGCTTTTCAAGCTGAGGGAAAAGTATCCTCTGACCCTGTTGCTATTGATGCCCCTGGAGGTTTTCTGTTTGAATGGTGGTCGGTTTTCTGGGACATTTTTATTGCTAGGACTAATGAGAAGCACTCCGAGGTGGCTGCATCGTATATAGAGACTCAATTAACTAAGGCAAGGGAACAACAACAACAGCAACAACAACAACAACAGCAGCAGCAGCAGCCTCAATCTCAGCAGTCACAGCATGCACAGCAGCAACAACAGATGCAAATTCAACAACTTATGTTGCAGAGGCATGCACAGCAGCAGCAGCAACAACAGCAGAACCAGCAACAGGCACAATCGCAGCAGCAGCCACAACCACAACAACAGCAAAATAGGGATAGGGCTCATCTCTTAAATGGTAGCGCAAATGGGTTAGGTGGAAACCCTGGAACTGCAAATTCAATAGCAACAAAGATGTATGAAGAAAGGTTAAAAGTTCCCCCCCAGAGGGACTCTTTGGACGATGCGGCAATGAAGCGAAGATTTGGTGAGAACATGGGCCAACTCTTGGACCCAAATCATGCCTCAATATTGAAGTCAGCTGCAGCTAGTGGTCAGCCTTCAGGGCAAGTTTTGCATGGCACTGCTGGCGGGATGTCTCCACAAGTTCAAGCTCGTAGTCAGCAATTACCAGGGTCTACACTGGATATGAAGAGTGAGATAAATCCTGTTTTAAATCCCAGAGCTGCAGGTCCTGAAGGATCCTTGTTAGGAATTTCTGGATCAAATCAAGGGAACAGCAATTTGACTTTGAAAGGGTGGCCACTCACAGGTCTGGAGCAACTTCGCTCTGGTTTACTTCAGCAGCAAAAGCCTTATATGCAGGCTCCTCAGCCATTTCATCAACTACAAATGTTGACACCACAGCATCAGCAACAGCTTATGCTTGCACAACAGAGTTTGGCGTCACCATCTGTCAGCGAAGAAAGTAGAAGGTTGAGAATGCTTTTGAGTAATAGGAATATTGGCCTAAATAAGGATGGCCTTTCGAACCCTGGGGGTGATGTGTTATCGAATGTTGGATCACCTCTTCATGGCGGTGGCCCTCCTTTTCCTCGTGGAGATACAGATATGCTAATGAAGTTGAAACTGGCTCAGTTACAGCAGCAGCAACATCAACAACAGTCGAGCATCAATGCACAGCAGCAGCAACTTCAACAGCATGCTCTTTCAAATCAGCAGTCTCAGACTTCAAACCATAGCATGCACCAGCAAGATAAGGTAGGGGGAGGTGGTGGTAGTGTCACCATGGATGGTAGCATGTCAAACTCATATAGAGGAAATGATCAGGTTTCAAAAAACCAGATGGGAAGAAAGAGAAAGCAACCTGTATCTTCTTCGGGTCCTGCTAATAGTTCAGGAACGGCAAATACGGCAGGCCCATCACCAAGTTCAGCCCCCTCAACTCCCTCAACTCATACTCCTGGAGATGCTATTTCAATGCCTGCCTTGCCTCATAATAGTAGTTCTTCAAAGCCTCTAATGATGTTTGGCACTGACGGTACCGGAACTCTTACATCACCTTCAAATCAGCTGGCTGATGTGGACCGCTTTGTGGAGGATGGATCTTTAGATGAAAATGTAGAGTCTTTTTTATCGCAAGATGATACAGACCCTAGAGACCCTGTTGGCCATTGTATGGATGTAAGCAAAGGCTTCACATTTTCTGATGTAAATTCTGTACGTGCAAGCTCAAGTAAAATTGCTTGCTGCCATTTCTCCTCTGATGGAAAGTTACTTGCAAGTGGTGGCCATGACAAAAAGGCTGTTATATGGTACACGGATTCACTAAAACAAAAAGCTGTTCTTGAAGAACACTCATCTTTGATAACTGATGTCCGTTTCAGTCCAAGCATGCCGCGTCTAGCAACATCTTCATTTGACAAAACTGTCAGGGTTTGGGATGTCGACAATCCCGGGTATTCCCTCCGCACTTTTACGGGACATTCTGCATCTGTTATGTCACTAGATTTTCACCCAAATAAAGATGATCTTATCTGCTCCTGTGATGGTGATGGTGAGATACGGTATTGGAGCATAAACAATGGCAGTTGTGTTAGAGTCTCTAAGGGTGGCACTACCCAGGTGAGATTTCAACCTCGTCTAGGGAGGTACCTTGCTGCAGCTGCTGAGAACATTGTGTCTATACTTGATGTGGAGACACAAGCATGCCGATATTCATTAAAGGGTCATACAAAGACAATAAATTCTGTATGTTGGGATCCATCTGGAGAGTTGATGGCATCGGCAAGTGAGGACTCCGTTAGGATTTGGACTCTTGGAATGGGAAGTGAAGGAGAATGTGTTCACGAGCTTAGCTGTAATGGCAGTAAGTTTCACTCATGTGTTTTCCATCCAACATTTCCTTCACTGCTCTTCATTGGCTGTTATCAGTCACTGGAGCTATGGAACATGGCTGAGAACAAGACAATGACTTTGTCTGCTCATGATGGTTTAATTACTGCCTTGTCTGTTTCAACTGTAAATGGTTTGATTGCTTCTGCCAGTCATGACAAGTTTATCAAGCTATGGAAGTAA 2667 0.4484 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLTKAREQQQQQQQQQQQQQQPQSQQSQHAQQQQQMQIQQLMLQRHAQQQQQQQQNQQQAQSQQQPQPQQQQNRDRAHLLNGSANGLGGNPGTANSIATKMYEERLKVPPQRDSLDDAAMKRRFGENMGQLLDPNHASILKSAAASGQPSGQVLHGTAGGMSPQVQARSQQLPGSTLDMKSEINPVLNPRAAGPEGSLLGISGSNQGNSNLTLKGWPLTGLEQLRSGLLQQQKPYMQAPQPFHQLQMLTPQHQQQLMLAQQSLASPSVSEESRRLRMLLSNRNIGLNKDGLSNPGGDVLSNVGSPLHGGGPPFPRGDTDMLMKLKLAQLQQQQHQQQSSINAQQQQLQQHALSNQQSQTSNHSMHQQDKVGGGGGSVTMDGSMSNSYRGNDQVSKNQMGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGDAISMPALPHNSSSSKPLMMFGTDGTGTLTSPSNQLADVDRFVEDGSLDENVESFLSQDDTDPRDPVGHCMDVSKGFTFSDVNSVRASSSKIACCHFSSDGKLLASGGHDKKAVIWYTDSLKQKAVLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDVDNPGYSLRTFTGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCVRVSKGGTTQVRFQPRLGRYLAAAAENIVSILDVETQACRYSLKGHTKTINSVCWDPSGELMASASEDSVRIWTLGMGSEGECVHELSCNGSKFHSCVFHPTFPSLLFIGCYQSLELWNMAENKTMTLSAHDGLITALSVSTVNGLIASASHDKFIKLWK 888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05278 888 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 771 803 - -
Trre5g05278 888 SMART WD40_4 597 636 IPR001680 GO:0005515
Trre5g05278 888 SMART WD40_4 808 847 IPR001680 GO:0005515
Trre5g05278 888 SMART WD40_4 725 761 IPR001680 GO:0005515
Trre5g05278 888 SMART WD40_4 682 722 IPR001680 GO:0005515
Trre5g05278 888 SMART WD40_4 639 678 IPR001680 GO:0005515
Trre5g05278 888 SMART WD40_4 764 802 IPR001680 GO:0005515
Trre5g05278 888 SMART WD40_4 849 888 IPR001680 GO:0005515
Trre5g05278 888 Coils Coil 79 100 - -
Trre5g05278 888 Coils Coil 407 427 - -
Trre5g05278 888 MobiDBLite consensus disorder prediction 406 448 - -
Trre5g05278 888 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 856 888 - -
Trre5g05278 888 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 689 727 - -
Trre5g05278 888 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 646 681 - -
Trre5g05278 888 CDD WD40 604 888 - -
Trre5g05278 888 SUPERFAMILY WD40 repeat-like 602 888 IPR036322 GO:0005515
Trre5g05278 888 MobiDBLite consensus disorder prediction 94 113 - -
Trre5g05278 888 MobiDBLite consensus disorder prediction 129 156 - -
Trre5g05278 888 FunFam Transcriptional corepressor LEUNIG 732 888 - -
Trre5g05278 888 Coils Coil 119 144 - -
Trre5g05278 888 Gene3D - 588 733 IPR015943 GO:0005515
Trre5g05278 888 ProSiteProfiles Trp-Asp (WD) repeats profile. 771 803 IPR001680 GO:0005515
Trre5g05278 888 Pfam WD domain, G-beta repeat 606 635 IPR001680 GO:0005515
Trre5g05278 888 Pfam WD domain, G-beta repeat 685 722 IPR001680 GO:0005515
Trre5g05278 888 Pfam WD domain, G-beta repeat 851 888 IPR001680 GO:0005515
Trre5g05278 888 Pfam WD domain, G-beta repeat 767 801 IPR001680 GO:0005515
Trre5g05278 888 Pfam WD domain, G-beta repeat 644 678 IPR001680 GO:0005515
Trre5g05278 888 ProSiteProfiles Trp-Asp (WD) repeats profile. 856 888 IPR001680 GO:0005515
Trre5g05278 888 ProSiteProfiles Trp-Asp (WD) repeats profile. 604 635 IPR001680 GO:0005515
Trre5g05278 888 ProSiteProfiles Trp-Asp (WD) repeats profile. 646 681 IPR001680 GO:0005515
Trre5g05278 888 SMART Lish 8 40 IPR006594 GO:0005515
Trre5g05278 888 MobiDBLite consensus disorder prediction 459 519 - -
Trre5g05278 888 ProSiteProfiles Trp-Asp (WD) repeats profile. 689 731 IPR001680 GO:0005515
Trre5g05278 888 Gene3D - 734 888 IPR015943 GO:0005515
Trre5g05278 888 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Trre5g05278 888 Pfam LisH 10 36 IPR006594 GO:0005515
Trre5g05278 888 ProSitePatterns Trp-Asp (WD) repeats signature. 665 679 IPR019775 -
Trre5g05278 888 MobiDBLite consensus disorder prediction 367 539 - -
Trre5g05278 888 PANTHER TRANSCRIPTION ACTIVATOR MSS11 2 888 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05278 Trre-Chr5 53744318 53751090 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05278 683 887 Miscellaneous Gene Families AT5G08390 25.238 1.20e-13 73.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Trre5g05278 WD40 0.0045 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05278 - - pvu:PHAVU_009G096600g 1252.27