Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05277 ATGTCTCAGACTAACTGGGAAGCTGATAAGATGTTAGATGTTTACATTCATGATTACCTAGTTAAGAGGGATTTGAAGGCTTCTGCTCAAGCTTTTCAAGCTGAGGGAAAAGTATCCTCTGACCCTGTTGCTATTGATGCCCCTGGAGGTTTTCTGTTTGAATGGTGGTCGGTTTTCTGGGACATTTTTATTGCTAGGACTAATGAGAAGCACTCCGAGGTGGCTGCATCGTATATAGAGACTCAATTAACTAAGGCAAGGGAACAACAACAACAGCAACAACAACAACAACAGCAGCAGCAGCAGCCTCAATCTCAGCAGTCACAGCATGCACAGCAGCAACAACAGATGCAAATTCAACAACTTATGTTGCAGAGGCATGCACAGCAGCAGCAGCAACAACAGCAGAACCAGCAACAGGCACAATCGCAGCAGCAGCCACAACCACAACAACAGCAAAATAGGGATAGGGCTCATCTCTTAAATGGTAGCGCAAATGGGTTAGGTGGAAACCCTGGAACTGCAAATTCAATAGCAACAAAGATGTATGAAGAAAGGTTAAAAGTTCCCCCCCAGAGGGACTCTTTGGACGATGCGGCAATGAAGCGAAGATTTGGTGAGAACATGGGCCAACTCTTGGACCCAAATCATGCCTCAATATTGAAGTCAGCTGCAGCTAGTGGTCAGCCTTCAGGGCAAGTTTTGCATGGCACTGCTGGCGGGATGTCTCCACAAGTTCAAGCTCGTAGTCAGCAATTACCAGGGTCTACACTGGATATGAAGAGTGAGATAAATCCTGTTTTAAATCCCAGAGCTGCAGGTCCTGAAGGATCCTTGTTAGGAATTTCTGGATCAAATCAAGGGAACAGCAATTTGACTTTGAAAGGGTGGCCACTCACAGGTCTGGAGCAACTTCGCTCTGGTTTACTTCAGCAGCAAAAGCCTTATATGCAGGCTCCTCAGCCATTTCATCAACTACAAATGTTGACACCACAGCATCAGCAACAGCTTATGCTTGCACAACAGAGTTTGGCGTCACCATCTGTCAGCGAAGAAAGTAGAAGGTTGAGAATGCTTTTGAGTAATAGGAATATTGGCCTAAATAAGGATGGCCTTTCGAACCCTGGGGGTGATGTGTTATCGAATGTTGGATCACCTCTTCATGGCGGTGGCCCTCCTTTTCCTCGTGGAGATACAGATATGCTAATGAAGTTGAAACTGGCTCAGTTACAGCAGCAGCAACATCAACAACAGTCGAGCATCAATGCACAGCAGCAGCAACTTCAACAGCATGCTCTTTCAAATCAGCAGTCTCAGACTTCAAACCATAGCATGCACCAGCAAGATAAGGTAGGGGGAGGTGGTGGTAGTGTCACCATGGATGGTAGCATGTCAAACTCATATAGAGGAAATGATCAGGTTTCAAAAAACCAGATGGGAAGAAAGAGAAAGCAACCTGTATCTTCTTCGGGTCCTGCTAATAGTTCAGGAACGGCAAATACGGCAGGCCCATCACCAAGTTCAGCCCCCTCAACTCCCTCAACTCATACTCCTGGAGATGCTATTTCAATGCCTGCCTTGCCTCATAATAGTAGTTCTTCAAAGCCTCTAATGATGTTTGGCACTGACGGTACCGGAACTCTTACATCACCTTCAAATCAGCTGTGGGATGATAAGGATCTTGAATTGCAGGCTGATGTGGACCGCTTTGTGGAGGATGGATCTTTAGATGAAAATGTAGAGTCTTTTTTATCGCAAGATGATACAGACCCTAGAGACCCTGTTGGCCATTGTATGGATGTAAGCAAAGGCTTCACATTTTCTGATGTAAATTCTGTACGTGCAAGCTCAAGTAAAATTGCTTGCTGCCATTTCTCCTCTGATGGAAAGTTACTTGCAAGTGGTGGCCATGACAAAAAGGCTGTTATATGGTACACGGATTCACTAAAACAAAAAGCTGTTCTTGAAGAACACTCATCTTTGATAACTGATGTCCGTTTCAGTCCAAGCATGCCGCGTCTAGCAACATCTTCATTTGACAAAACTGTCAGGGTTTGGGATGTCGACAATCCCGGGTATTCCCTCCGCACTTTTACGGGACATTCTGCATCTGTTATGTCACTAGATTTTCACCCAAATAAAGATGATCTTATCTGCTCCTGTGATGGTGATGGTGAGATACGGTATTGGAGCATAAACAATGGCAGTTGTGTTAGAGTCTCTAAGGGTGGCACTACCCAGGTGAGATTTCAACCTCGTCTAGGGAGGTACCTTGCTGCAGCTGCTGAGAACATTGTGTCTATACTTGATGTGGAGACACAAGCATGCCGATATTCATTAAAGGGTCATACAAAGACAATAAATTCTGTATGTTGGGATCCATCTGGAGAGTTGATGGCATCGGCAAGTGAGGACTCCGTTAGGATTTGGACTCTTGGAATGGGAAGTGAAGGAGAATGTGTTCACGAGCTTAGCTGTAATGGCAGTAAGTTTCACTCATGTGTTTTCCATCCAACATTTCCTTCACTGCTCTTCATTGGCTGTTATCAGTCACTGGAGCTATGGAACATGGCTGAGAACAAGACAATGACTTTGTCTGCTCATGATGGTTTAATTACTGCCTTGTCTGTTTCAACTGTAAATGGTTTGATTGCTTCTGCCAGTCATGACAAGTTTATCAAGCTATGGAAGTAA 2694 0.448 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLTKAREQQQQQQQQQQQQQQPQSQQSQHAQQQQQMQIQQLMLQRHAQQQQQQQQNQQQAQSQQQPQPQQQQNRDRAHLLNGSANGLGGNPGTANSIATKMYEERLKVPPQRDSLDDAAMKRRFGENMGQLLDPNHASILKSAAASGQPSGQVLHGTAGGMSPQVQARSQQLPGSTLDMKSEINPVLNPRAAGPEGSLLGISGSNQGNSNLTLKGWPLTGLEQLRSGLLQQQKPYMQAPQPFHQLQMLTPQHQQQLMLAQQSLASPSVSEESRRLRMLLSNRNIGLNKDGLSNPGGDVLSNVGSPLHGGGPPFPRGDTDMLMKLKLAQLQQQQHQQQSSINAQQQQLQQHALSNQQSQTSNHSMHQQDKVGGGGGSVTMDGSMSNSYRGNDQVSKNQMGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGDAISMPALPHNSSSSKPLMMFGTDGTGTLTSPSNQLWDDKDLELQADVDRFVEDGSLDENVESFLSQDDTDPRDPVGHCMDVSKGFTFSDVNSVRASSSKIACCHFSSDGKLLASGGHDKKAVIWYTDSLKQKAVLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDVDNPGYSLRTFTGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCVRVSKGGTTQVRFQPRLGRYLAAAAENIVSILDVETQACRYSLKGHTKTINSVCWDPSGELMASASEDSVRIWTLGMGSEGECVHELSCNGSKFHSCVFHPTFPSLLFIGCYQSLELWNMAENKTMTLSAHDGLITALSVSTVNGLIASASHDKFIKLWK 897
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05277 897 Coils Coil 79 100 - -
Trre5g05277 897 ProSitePatterns Trp-Asp (WD) repeats signature. 674 688 IPR019775 -
Trre5g05277 897 SMART WD40_4 734 770 IPR001680 GO:0005515
Trre5g05277 897 SMART WD40_4 817 856 IPR001680 GO:0005515
Trre5g05277 897 SMART WD40_4 606 645 IPR001680 GO:0005515
Trre5g05277 897 SMART WD40_4 773 811 IPR001680 GO:0005515
Trre5g05277 897 SMART WD40_4 691 731 IPR001680 GO:0005515
Trre5g05277 897 SMART WD40_4 858 897 IPR001680 GO:0005515
Trre5g05277 897 SMART WD40_4 648 687 IPR001680 GO:0005515
Trre5g05277 897 Coils Coil 407 427 - -
Trre5g05277 897 PANTHER TRANSCRIPTION ACTIVATOR MSS11 2 897 - -
Trre5g05277 897 MobiDBLite consensus disorder prediction 406 448 - -
Trre5g05277 897 SUPERFAMILY WD40 repeat-like 611 897 IPR036322 GO:0005515
Trre5g05277 897 ProSiteProfiles Trp-Asp (WD) repeats profile. 655 690 IPR001680 GO:0005515
Trre5g05277 897 FunFam Transcriptional corepressor LEUNIG 741 897 - -
Trre5g05277 897 MobiDBLite consensus disorder prediction 94 113 - -
Trre5g05277 897 ProSiteProfiles Trp-Asp (WD) repeats profile. 865 897 IPR001680 GO:0005515
Trre5g05277 897 MobiDBLite consensus disorder prediction 129 156 - -
Trre5g05277 897 Coils Coil 119 144 - -
Trre5g05277 897 ProSiteProfiles Trp-Asp (WD) repeats profile. 698 740 IPR001680 GO:0005515
Trre5g05277 897 ProSiteProfiles Trp-Asp (WD) repeats profile. 780 812 IPR001680 GO:0005515
Trre5g05277 897 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 698 736 - -
Trre5g05277 897 ProSiteProfiles Trp-Asp (WD) repeats profile. 613 644 IPR001680 GO:0005515
Trre5g05277 897 SMART Lish 8 40 IPR006594 GO:0005515
Trre5g05277 897 CDD WD40 613 897 - -
Trre5g05277 897 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 865 897 - -
Trre5g05277 897 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 655 690 - -
Trre5g05277 897 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 780 812 - -
Trre5g05277 897 MobiDBLite consensus disorder prediction 459 519 - -
Trre5g05277 897 Gene3D - 746 897 IPR015943 GO:0005515
Trre5g05277 897 Gene3D - 592 745 IPR015943 GO:0005515
Trre5g05277 897 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Trre5g05277 897 Pfam LisH 10 36 IPR006594 GO:0005515
Trre5g05277 897 MobiDBLite consensus disorder prediction 367 539 - -
Trre5g05277 897 Pfam WD domain, G-beta repeat 615 644 IPR001680 GO:0005515
Trre5g05277 897 Pfam WD domain, G-beta repeat 653 687 IPR001680 GO:0005515
Trre5g05277 897 Pfam WD domain, G-beta repeat 860 897 IPR001680 GO:0005515
Trre5g05277 897 Pfam WD domain, G-beta repeat 776 810 IPR001680 GO:0005515
Trre5g05277 897 Pfam WD domain, G-beta repeat 694 731 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05277 Trre-Chr5 53744318 53751090 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05277 692 896 Miscellaneous Gene Families AT5G08390 25.238 1.52e-13 72.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Trre5g05277 WD40 0.0045 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05277 - - gmx:100816263 1279.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05277 5 53744318 53751090 Trre5g05277 5 53744318 53751090 ECH
Trre1g00733 1 5548773 5556343 Trre5g05277 5 53744318 53751090 PCT