Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05276 ATGTCTCAGACTAACTGGGAAGCTGATAAGATGTTAGATGTTTACATTCATGATTACCTAGTTAAGAGGGATTTGAAGGCTTCTGCTCAAGCTTTTCAAGCTGAGGGAAAAGTATCCTCTGACCCTGTTGCTATTGATGCCCCTGGAGGTTTTCTGTTTGAATGGTGGTCGGTTTTCTGGGACATTTTTATTGCTAGGACTAATGAGAAGCACTCCGAGGTGGCTGCATCGTATATAGAGACTCAATTAACTAAGGCAAGGGAACAACAACAACAGCAACAACAACAACAACAGCAGCAGCAGCAGCCTCAATCTCAGCAGTCACAGCATGCACAGCAGCAACAACAGATGCAAATTCAACAACTTATGTTGCAGAGGCATGCACAGCAGCAGCAGCAACAACAGCAGAACCAGCAACAGGCACAATCGCAGCAGCAGCCACAACCACAACAACAGCAAAATAGGGATAGGGCTCATCTCTTAAATGGTAGCGCAAATGGGTTAGGTGGAAACCCTGGAACTGCAAATTCAATAGCAACAAAGATGTATGAAGAAAGGTTAAAAGTTCCCCCCCAGAGGGACTCTTTGGACGATGCGGCAATGAAGCGAAGATTTGGTGAGAACATGGGCCAACTCTTGGACCCAAATCATGCCTCAATATTGAAGTCAGCTGCAGCTAGTGGTCAGCCTTCAGGCACCAAATTTCTTGATTTCAGGCAAGTTTTGCATGGCACTGCTGGCGGGATGTCTCCACAAGTTCAAGCTCGTAGTCAGCAATTACCAGGGTCTACACTGGATATGAAGAGTGAGATAAATCCTGTTTTAAATCCCAGAGCTGCAGGTCCTGAAGGATCCTTGTTAGGAATTTCTGGATCAAATCAAGGGAACAGCAATTTGACTTTGAAAGGGTGGCCACTCACAGGTCTGGAGCAACTTCGCTCTGGTTTACTTCAGCAGCAAAAGCCTTATATGCAGGCTCCTCAGCCATTTCATCAACTACAAATGTTGACACCACAGCATCAGCAACAGCTTATGCTTGCACAACAGAGTTTGGCGTCACCATCTGTCAGCGAAGAAAGTAGAAGGTTGAGAATGCTTTTGAGTAATAGGAATATTGGCCTAAATAAGGATGGCCTTTCGAACCCTGGGGGTGATGTGTTATCGAATGTTGGATCACCTCTTCATGGCGGTGGCCCTCCTTTTCCTCGTGGAGATACAGATATGCTAATGAAGTTGAAACTGGCTCAGTTACAGCAGCAGCAACATCAACAACAGTCGAGCATCAATGCACAGCAGCAGCAACTTCAACAGCATGCTCTTTCAAATCAGCAGTCTCAGACTTCAAACCATAGCATGCACCAGCAAGATAAGGTAGGGGGAGGTGGTGGTAGTGTCACCATGGATGGTAGCATGTCAAACTCATATAGAGGAAATGATCAGGTTTCAAAAAACCAGATGGGAAGAAAGAGAAAGCAACCTGTATCTTCTTCGGGTCCTGCTAATAGTTCAGGAACGGCAAATACGGCAGGCCCATCACCAAGTTCAGCCCCCTCAACTCCCTCAACTCATACTCCTGGAGATGCTATTTCAATGCCTGCCTTGCCTCATAATAGTAGTTCTTCAAAGCCTCTAATGATGTTTGGCACTGACGGTACCGGAACTCTTACATCACCTTCAAATCAGCTGTGGGATGATAAGGATCTTGAATTGCAGGCTGATGTGGACCGCTTTGTGGAGGATGGATCTTTAGATGAAAATGTAGAGTCTTTTTTATCGCAAGATGATACAGACCCTAGAGACCCTGTTGGCCATTGTATGGATGTAAGCAAAGGCTTCACATTTTCTGATGTAAATTCTGTACGTGCAAGCTCAAGTAAAATTGCTTGCTGCCATTTCTCCTCTGATGGAAAGTTACTTGCAAGTGGTGGCCATGACAAAAAGGCTGTTATATGGTACACGGATTCACTAAAACAAAAAGCTGTTCTTGAAGAACACTCATCTTTGATAACTGATGTCCGTTTCAGTCCAAGCATGCCGCGTCTAGCAACATCTTCATTTGACAAAACTGTCAGGGTTTGGGATGTCGACAATCCCGGGTATTCCCTCCGCACTTTTACGGGACATTCTGCATCTGTTATGTCACTAGATTTTCACCCAAATAAAGATGATCTTATCTGCTCCTGTGATGGTGATGGTGAGATACGGTATTGGAGCATAAACAATGGCAGTTGTGTTAGAGTCTCTAAGGGTGGCACTACCCAGGTGAGATTTCAACCTCGTCTAGGGAGGTACCTTGCTGCAGCTGCTGAGAACATTGTGTCTATACTTGATGTGGAGACACAAGCATGCCGATATTCATTAAAGGGTCATACAAAGACAATAAATTCTGTATGTTGGGATCCATCTGGAGAGTTGATGGCATCGGCAAGTGAGGACTCCGTTAGGATTTGGACTCTTGGAATGGGAAGTGAAGGAGAATGTGTTCACGAGCTTAGCTGTAATGGCAGTAAGTTTCACTCATGTGTTTTCCATCCAACATTTCCTTCACTGCTCTTCATTGGCTGTTATCAGTCACTGGAGCTATGGAACATGGCTGAGAACAAGACAATGACTTTGTCTGCTCATGATGGTTTAATTACTGCCTTGTCTGTTTCAACTGTAAATGGTTTGATTGCTTCTGCCAGTCATGACAAGTTTATCAAGCTATGGAAGTAA 2715 0.4471 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLTKAREQQQQQQQQQQQQQQPQSQQSQHAQQQQQMQIQQLMLQRHAQQQQQQQQNQQQAQSQQQPQPQQQQNRDRAHLLNGSANGLGGNPGTANSIATKMYEERLKVPPQRDSLDDAAMKRRFGENMGQLLDPNHASILKSAAASGQPSGTKFLDFRQVLHGTAGGMSPQVQARSQQLPGSTLDMKSEINPVLNPRAAGPEGSLLGISGSNQGNSNLTLKGWPLTGLEQLRSGLLQQQKPYMQAPQPFHQLQMLTPQHQQQLMLAQQSLASPSVSEESRRLRMLLSNRNIGLNKDGLSNPGGDVLSNVGSPLHGGGPPFPRGDTDMLMKLKLAQLQQQQHQQQSSINAQQQQLQQHALSNQQSQTSNHSMHQQDKVGGGGGSVTMDGSMSNSYRGNDQVSKNQMGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGDAISMPALPHNSSSSKPLMMFGTDGTGTLTSPSNQLWDDKDLELQADVDRFVEDGSLDENVESFLSQDDTDPRDPVGHCMDVSKGFTFSDVNSVRASSSKIACCHFSSDGKLLASGGHDKKAVIWYTDSLKQKAVLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDVDNPGYSLRTFTGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCVRVSKGGTTQVRFQPRLGRYLAAAAENIVSILDVETQACRYSLKGHTKTINSVCWDPSGELMASASEDSVRIWTLGMGSEGECVHELSCNGSKFHSCVFHPTFPSLLFIGCYQSLELWNMAENKTMTLSAHDGLITALSVSTVNGLIASASHDKFIKLWK 904
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05276 904 ProSiteProfiles Trp-Asp (WD) repeats profile. 662 697 IPR001680 GO:0005515
Trre5g05276 904 Coils Coil 79 100 - -
Trre5g05276 904 MobiDBLite consensus disorder prediction 466 526 - -
Trre5g05276 904 ProSitePatterns Trp-Asp (WD) repeats signature. 681 695 IPR019775 -
Trre5g05276 904 CDD WD40 620 904 - -
Trre5g05276 904 ProSiteProfiles Trp-Asp (WD) repeats profile. 705 747 IPR001680 GO:0005515
Trre5g05276 904 MobiDBLite consensus disorder prediction 94 113 - -
Trre5g05276 904 MobiDBLite consensus disorder prediction 129 156 - -
Trre5g05276 904 Coils Coil 119 144 - -
Trre5g05276 904 SUPERFAMILY WD40 repeat-like 618 904 IPR036322 GO:0005515
Trre5g05276 904 Pfam WD domain, G-beta repeat 701 738 IPR001680 GO:0005515
Trre5g05276 904 Pfam WD domain, G-beta repeat 867 904 IPR001680 GO:0005515
Trre5g05276 904 Pfam WD domain, G-beta repeat 783 817 IPR001680 GO:0005515
Trre5g05276 904 Pfam WD domain, G-beta repeat 622 651 IPR001680 GO:0005515
Trre5g05276 904 Pfam WD domain, G-beta repeat 660 694 IPR001680 GO:0005515
Trre5g05276 904 MobiDBLite consensus disorder prediction 413 455 - -
Trre5g05276 904 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 787 819 - -
Trre5g05276 904 SMART Lish 8 40 IPR006594 GO:0005515
Trre5g05276 904 SMART WD40_4 655 694 IPR001680 GO:0005515
Trre5g05276 904 SMART WD40_4 698 738 IPR001680 GO:0005515
Trre5g05276 904 SMART WD40_4 865 904 IPR001680 GO:0005515
Trre5g05276 904 SMART WD40_4 780 818 IPR001680 GO:0005515
Trre5g05276 904 SMART WD40_4 613 652 IPR001680 GO:0005515
Trre5g05276 904 SMART WD40_4 741 777 IPR001680 GO:0005515
Trre5g05276 904 SMART WD40_4 824 863 IPR001680 GO:0005515
Trre5g05276 904 MobiDBLite consensus disorder prediction 374 547 - -
Trre5g05276 904 FunFam Transcriptional corepressor LEUNIG 748 904 - -
Trre5g05276 904 Pfam LisH 10 36 IPR006594 GO:0005515
Trre5g05276 904 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 662 697 - -
Trre5g05276 904 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 705 743 - -
Trre5g05276 904 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 872 904 - -
Trre5g05276 904 Coils Coil 414 434 - -
Trre5g05276 904 Gene3D - 753 904 IPR015943 GO:0005515
Trre5g05276 904 ProSiteProfiles Trp-Asp (WD) repeats profile. 787 819 IPR001680 GO:0005515
Trre5g05276 904 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Trre5g05276 904 ProSiteProfiles Trp-Asp (WD) repeats profile. 872 904 IPR001680 GO:0005515
Trre5g05276 904 PANTHER TRANSCRIPTION ACTIVATOR MSS11 2 904 - -
Trre5g05276 904 MobiDBLite consensus disorder prediction 533 547 - -
Trre5g05276 904 ProSiteProfiles Trp-Asp (WD) repeats profile. 620 651 IPR001680 GO:0005515
Trre5g05276 904 Gene3D - 599 752 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05276 Trre-Chr5 53744318 53751090 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05276 699 903 Miscellaneous Gene Families AT5G08390 25.238 1.63e-13 72.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Trre5g05276 WD40 0.0046 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05276 - - gmx:100816263 1272.69