Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05274 ATGGAAGAAATTGAAGGTGTTAATTGTTCTAGTGAGAGTCGACCTCCACATCCTAATCCATCTATTTCTTCTGCATTTCGTCAATGTCAACGCAATGATCCTGTCGTTTTGCCATGCAGAAAATCTCTTGTTCGTCACGCTTCTCTTCAGACTAAAATGAAGTTGTCAGCTGAGGATGTTACTGAAGATTGCCAGTCTGATTTCCTTCCAAACCTTCGTTCTGGAGGATATGCTGATATTGGGTTCCGGTCTAGTATGGAGGATGTGTATGTTTGTGTTGACAACTTTATGCAGGATCATGGGGTCAACAAACATGTTATAGATGGACCGAGTGCTTTCTATGGGGTGTTTGATGGACACGGTGGAAAGCATGCAGCTGACTTTGCTTGCAATCATTTGCCAAAGTTCATTCTCGAGGATAAAGATTTCCCAGTTGATATTGAAAGGATAGTTGCTTCGGCCTTTCTGCAAACAGACAATGCATTTGCAGAAGCCTGTTCTCTTGATGCTGCCCTTGCATCTGGCACCACTGCATTGGCTACTCTTATTATAGGAAGGTTGCTGGTGGTGGCAAATGCTGGAGATTGTCGAGCAGTGCTGTGCCGTCGTGGAAAAGCAATTGACATGTCAAGAGACCACAAACCAGTTTGCATGAAAGAGCAGAGGCGTATCGAGGCATCTGGGGGTTATGTCTACGATGGATATCTTAACGGCCAACTTAATGTTGCTCGAGCTATTGGTGACTGGCACATGGAAGGAATGAAATGCAAAGATGGTGGACCACTAAGTGCAGAGCCTGAGCTCATTACTACTAAACTTACTGCCGAGGACGAATTTCTCATCATAGGCTGCGATGGGATTTGGGATGTTTTTAGAAGCCAAAATGCTGTAGATTTTGCTCGGCGCAGGCTTCAGGAGCATAACGACCCAGCCGTGTGTAGTAAGGATCTGGTTGACGAGGCCATGAAGAGAAAAAGTGGAGACAATTTAGCTGCTGTTGTGGTTTGCTTTCAGCAGCATCCTCCTCCGAATTTGGTAGCACCGCGCTCCAGAGTTCACAGGAGCTTCTCTGCTGAAGGTTTGAAGGAGTTGCAAAGCTTTTTGGATAGTTTGGAAAAATGA 1122 0.4528 MEEIEGVNCSSESRPPHPNPSISSAFRQCQRNDPVVLPCRKSLVRHASLQTKMKLSAEDVTEDCQSDFLPNLRSGGYADIGFRSSMEDVYVCVDNFMQDHGVNKHVIDGPSAFYGVFDGHGGKHAADFACNHLPKFILEDKDFPVDIERIVASAFLQTDNAFAEACSLDAALASGTTALATLIIGRLLVVANAGDCRAVLCRRGKAIDMSRDHKPVCMKEQRRIEASGGYVYDGYLNGQLNVARAIGDWHMEGMKCKDGGPLSAEPELITTKLTAEDEFLIIGCDGIWDVFRSQNAVDFARRRLQEHNDPAVCSKDLVDEAMKRKSGDNLAAVVVCFQQHPPPNLVAPRSRVHRSFSAEGLKELQSFLDSLEK 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05274 373 SMART PP2C_4 63 335 IPR001932 -
Trre5g05274 373 Gene3D - 51 341 IPR036457 -
Trre5g05274 373 ProSiteProfiles PPM-type phosphatase domain profile. 73 337 IPR001932 -
Trre5g05274 373 MobiDBLite consensus disorder prediction 1 22 - -
Trre5g05274 373 ProSitePatterns PPM-type phosphatase domain signature. 113 121 IPR000222 GO:0043169
Trre5g05274 373 PANTHER PROTEIN PHOSPHATASE 2C 58 335 IPR015655 GO:0004722|GO:0006470
Trre5g05274 373 SUPERFAMILY PP2C-like 66 339 IPR036457 -
Trre5g05274 373 FunFam Probable protein phosphatase 2C 22 56 340 - -
Trre5g05274 373 CDD PP2Cc 73 337 IPR001932 -
Trre5g05274 373 Coils Coil 361 373 - -
Trre5g05274 373 Pfam Protein phosphatase 2C 81 329 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05274 Trre-Chr5 53716844 53719298 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05274 1 371 PP2C-type Phosphatase Gene Family AT2G25620 65.051 1.07e-179 503
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBP Trre5g05274 PP2C 2.9e-68 CL0238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05274 K14803 - gmx:100804558 601.668