Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05262 ATGATGTATGAAAGCAACGACAATTCCGTGGGTGATGATGAGAGAAACATTCTAAACATGATGCAAAATGATAATGGCGATAGTTTTCTAGAGGATCGGCGCAATGTGTTTTTCCTGGATCAGGATTGCAGCCAATACAGCCTCTCCGGTTTTCCCCTCCCTGCCTTCGCCAACGAATTAAGCGCCAGGAGGAATAAACTCCCCAAGTATATTATCTCTCCTCAGAACCATTATTACAGGGTGTGGCAGGTGTTTTTGGCGCTTTTAGTTTTCTACAGTGCATGGATGTCACCATTTGAATTAGGGTTCTTGGATGAACCTTCGTTATCTCTTTCGATTATCGATAATTCTGTGAATCTTTTATTTTGCATTGATATTGTGTTAACCTTCTTTGTTGCGTATTATGACAAACTTACATATTTGCTTGTGGACAAGCAAGGGAAAATTGTGATGAGATATCTGAAATCATGGTTTCTGCTTGATGTCATTTCCACAATTCCTTATGAATTCGTCCGCCAATTGTTGCCTAATGACATCAACATTTATGGCTACTTCGGTCTGCTTCGCCTTTGGCGTCTACATAGAGTCAGTGCCTTGTTTGCAAAATTAGAAAAGGACAGACATTATGACTATTTCTGGTTGCGGTGTTTAAAGCTTATGTGTGTTACTCTATTTGTAACGCATTTTGGTGCCTGCATTTTCTACTTTCTTGCCAACCGTTTTGTCGATGACCGGAGTACAACATGGCTTGGACTTATTCCTGATTTGGATGACAAGGATAACATATCTCTCTACATAACATCGGTATACTGGTCCATGATCACAATTTCAACACTTGGTTATGGTGATCTACATCCTGTAAATACAAAAGAGATGATATTTTTGATATTCTATATACTCGTTAATGTGGCACTTACCTCATACCTCATTGGAAACATGACAAATTTAGTTGTTCATTTCACAAGCAGAACTAGCAAATATAGGGACACAGTGAAAGCTGCCACAAAATTTGCTCAACGAAATAAAATACCTACCCGGTTGGAAGAACAGATGCTTGCTCAGTTGCTTATGAAGTATAGAACTGATTTAGAAGGAGTGCAGCAACAAGATGTTATTGATTCCCTTCCAAAAGCGATTCGATCTAGCGTCTCTTACTGCTTATTCTATCCAATAATGAACAGAGTATACTTGTTTGCGGGAGTGTCAACAGACCTTACTTTTCAATTGGTTACGGAGATGAAGGCGGAGTATTTTCCTCCAAAGGAAGACGTTGTTTTGGAAAATGAAGCACCAACGGACTTTTATATCTTTGTCACTGGTGGTGCAGAACTTATCAAACGAGTGAATGGAGTAGAACAGGTTGTTGGTAAGATCCAACCAGGAGAGTTAGTTGGCGAAGTAGGAGTTCTAGGTTACATACCTCAGCCATATTCATCCCGAACTACTCGATTGAGCCAAATTTTGCGCCTGGACCGTACTGCATTTTTGAACCATGTTCGTCAAAGTGTTGGAGATGGGGCAATAATTATGAACAATTTTCTCAATCATTTAGAAACTTCCACTATTCCAGGGATGGATGCTGTTTTTGCAGAAACAATGGCCATGTTGGCTCGTGGTAAAACAGATCTGCCTATCAGCACATGCTTTGCAGTAAGCAGAAATGACAATATATTGTTACGTCAGTTGTTGAAGAAGGGTTCAGATCCAAATGAAGCAGACAGACGTGGAAGGGCAGCGTTGCATATTGCAGCTTCTAATGGCTATGAGAATTGTGTAACTTTGCTTTTACAGTTTGGTGCTGATCCAAATAGACAAGATTTGGATGGCAATATCCCATTATGGGAAGCAATGAGTGGGGGACATAAATTTGTCAAGAAACTTCTCATAGACAATGGTGCAAACATATTTGTAACCGATGTAGGGCATTTAGCATGTCTTGCAGCTCGGAAAAATAACACTGAATTGCTCATGGAACTCATAGAATTCGGTGTGGATGTGACAAAATCTGAAAGAAGTGGAACCACTGCCCTGCATACAGCAGTAAGTGAAGGAAATGTAGAGATAGTGAAGCTACTTGTAGACCTTGGAGCTGAAGTTGATAAGCAAGATAATTGTGGCTGGACTCCAAGGGATTTGGCAGAACAACAAGGCCATGAAGAAATTAAAAATATATTTCAGAAAATTAAAGAGAACAAACAAAGCACACCTGTTATTCCAATACCAGATAATGGTAAGCCTAATGTGCCTTACATAGGAAAGATTCAAAGTGAATCTGTTATGCCTGATATTATTGGATCCCAAGAATGCTTGCTACAATCACATATTCAAGACGAGTTGCCATGTTTAAATGATCATCAACGACGAAGGGCCAACACCTATCGTAATTCAATTTTCGGGATGATCTCTGCTGCTAATCGTAATAAAAAACATCGTGAGGTGTATGAAAGAAACACTGATAATGCTGCGAACATGAATGGATTAGTAGCTAGAGTGACACTTAGTTGTCCTGAAAGAGGTGAACATGGTCGAAAGCTTACTTTTCTGCCCAAGTCCCTTGAAGAACTGCTAGACCTTGGTGCCAAAATGTTTGATATCTCACCCACCAAAATTTTGACCAAAGAAGGAGCTGAAATTGATGATATAGATCTTATAAGAGATGGTGATCACCTTATTATTGCAAATGACTGA 2688 0.3962 MMYESNDNSVGDDERNILNMMQNDNGDSFLEDRRNVFFLDQDCSQYSLSGFPLPAFANELSARRNKLPKYIISPQNHYYRVWQVFLALLVFYSAWMSPFELGFLDEPSLSLSIIDNSVNLLFCIDIVLTFFVAYYDKLTYLLVDKQGKIVMRYLKSWFLLDVISTIPYEFVRQLLPNDINIYGYFGLLRLWRLHRVSALFAKLEKDRHYDYFWLRCLKLMCVTLFVTHFGACIFYFLANRFVDDRSTTWLGLIPDLDDKDNISLYITSVYWSMITISTLGYGDLHPVNTKEMIFLIFYILVNVALTSYLIGNMTNLVVHFTSRTSKYRDTVKAATKFAQRNKIPTRLEEQMLAQLLMKYRTDLEGVQQQDVIDSLPKAIRSSVSYCLFYPIMNRVYLFAGVSTDLTFQLVTEMKAEYFPPKEDVVLENEAPTDFYIFVTGGAELIKRVNGVEQVVGKIQPGELVGEVGVLGYIPQPYSSRTTRLSQILRLDRTAFLNHVRQSVGDGAIIMNNFLNHLETSTIPGMDAVFAETMAMLARGKTDLPISTCFAVSRNDNILLRQLLKKGSDPNEADRRGRAALHIAASNGYENCVTLLLQFGADPNRQDLDGNIPLWEAMSGGHKFVKKLLIDNGANIFVTDVGHLACLAARKNNTELLMELIEFGVDVTKSERSGTTALHTAVSEGNVEIVKLLVDLGAEVDKQDNCGWTPRDLAEQQGHEEIKNIFQKIKENKQSTPVIPIPDNGKPNVPYIGKIQSESVMPDIIGSQECLLQSHIQDELPCLNDHQRRRANTYRNSIFGMISAANRNKKHREVYERNTDNAANMNGLVARVTLSCPERGEHGRKLTFLPKSLEELLDLGAKMFDISPTKILTKEGAEIDDIDLIRDGDHLIIAND 895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05262 895 Pfam Cyclic nucleotide-binding domain 417 501 IPR000595 -
Trre5g05262 895 Pfam KHA, dimerisation domain of potassium ion channel 830 892 IPR021789 -
Trre5g05262 895 ProSiteProfiles Ankyrin repeat profile. 608 640 IPR002110 GO:0005515
Trre5g05262 895 SUPERFAMILY Ankyrin repeat 549 726 IPR036770 -
Trre5g05262 895 SUPERFAMILY Voltage-gated potassium channels 74 318 - -
Trre5g05262 895 ProSiteProfiles Ankyrin repeat profile. 575 607 IPR002110 GO:0005515
Trre5g05262 895 FunFam Potassium channel KAT2 386 521 - -
Trre5g05262 895 PRINTS EAG/ELK/ERG potassium channel family signature 265 282 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trre5g05262 895 PRINTS EAG/ELK/ERG potassium channel family signature 115 125 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trre5g05262 895 PRINTS EAG/ELK/ERG potassium channel family signature 309 318 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trre5g05262 895 PRINTS EAG/ELK/ERG potassium channel family signature 291 302 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trre5g05262 895 PRINTS EAG/ELK/ERG potassium channel family signature 92 99 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trre5g05262 895 Pfam Ion transport protein 80 324 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Trre5g05262 895 Gene3D Jelly Rolls 363 521 IPR014710 -
Trre5g05262 895 ProSiteProfiles cAMP/cGMP binding motif profile. 397 495 IPR000595 -
Trre5g05262 895 ProSiteProfiles Ankyrin repeat region circular profile. 575 606 - -
Trre5g05262 895 SMART cnmp_10 397 514 IPR000595 -
Trre5g05262 895 FunFam Potassium channel KAT3 81 319 - -
Trre5g05262 895 ProSiteProfiles Ankyrin repeat region circular profile. 608 639 - -
Trre5g05262 895 Gene3D - 79 319 - -
Trre5g05262 895 ProSiteProfiles Ankyrin repeat profile. 672 704 IPR002110 GO:0005515
Trre5g05262 895 CDD CAP_ED 397 497 IPR000595 -
Trre5g05262 895 ProSiteProfiles Ankyrin repeat region circular profile. 672 704 - -
Trre5g05262 895 Pfam Ankyrin repeats (3 copies) 549 639 IPR002110 GO:0005515
Trre5g05262 895 Pfam Ankyrin repeats (3 copies) 646 721 IPR002110 GO:0005515
Trre5g05262 895 SUPERFAMILY cAMP-binding domain-like 322 516 IPR018490 -
Trre5g05262 895 PANTHER POTASSIUM CHANNEL AKT1 45 892 IPR045319 GO:0005249|GO:0006813
Trre5g05262 895 ProSiteProfiles KHA domain profile. 830 895 IPR021789 -
Trre5g05262 895 SMART ANK_2a 639 668 IPR002110 GO:0005515
Trre5g05262 895 SMART ANK_2a 608 637 IPR002110 GO:0005515
Trre5g05262 895 SMART ANK_2a 672 701 IPR002110 GO:0005515
Trre5g05262 895 SMART ANK_2a 542 571 IPR002110 GO:0005515
Trre5g05262 895 SMART ANK_2a 575 604 IPR002110 GO:0005515
Trre5g05262 895 Gene3D - 544 727 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05262 Trre-Chr5 53636986 53641960 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05262 40 895 Ion Channels AT2G25600 53.488 0.0 905
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05262 K21867 - gmx:100786870 1040.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05262 5 53636986 53641960 Trre5g05262 5 53636986 53641960 ECH
Trre1g00717 1 5399087 5403137 Trre5g05262 5 53636986 53641960 PCT