Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05252 ATGGCAAAGAAAAAGAATCCTTTGGTGTTTATGGACGTGTCTATTGATGGGGATCCTGTTGAAAGGATGGTTTTTGAGCTTTTCTACGATGTTGCTCCCAAGACTGCAGAAAATTTCCGTGCATTATCTACAGGAGAGAGAGGTGTCAGTCCAAATACTGGAAAATCGCTGCATTACAAGGGTTCTTTCTTCCATTGTGTTATAAAAGGCTCTATTGTGAAGGGTGGTGATTTTGTCAATCGAAATGGGACTGGTGGAGAAAGCATATATGGTTCAAACTTCCCAGATGAGTCACCTAGGCTTAAGCACGACGCCCCTGGGCTTTTGTCGATGGCGATTGCGGACCGTCACACATTTGGTTCTCATTTTATTATCACTTTGAAAGCAGATCATCATCTTGATAGCAGGAAGCATGTAGTCTTTGGGAAGCTTGTTGAAGGGCTTCAAGTATTGAAGAGAATTGAAGATGTGGGTGATGATGAAGGGCATCCAACTGTAACTGTTAAAATCATTAATTGTGGTGAATATAACGACGATGGGAAGAAGGTAAATAAATCAAAAACTGGAAAGGATGCATCCAACGAAGGGAATAATCATGAAACACGCAAGAAGGGAAAGCACAAAAAATCTTCAAAAGACCGAAGGAAGAGGAGAAGATACCACTCATCTGAAACCGAGAGTTCTTCAGATTCAGACACGGAATCTTCAGAAACTGATAGTGATTCTGACTCAGACCTGTCTTCATCATCTGATATAAGTTCATCTAGTGATGACCGGCGAAGAAAGAGAAAGAGATCCAAGAAAGATAAATATAAACGTGGAAAAAGGAGAGATAAACGCCGTGACAGAAGGCGAAGAAGAAGGGATAAGAGGTCGAAGCGTAGATCAAAAAGGGATTCTGGCAGCGATTCAGATAGTGAGAGTAACAGTAGCTCTGATGGTGAAAGTCTTGATACTCAACAGAAAGAGCTGAAGCGAAAAGACCGTTCTCATAAAAAAGCTGAAGTGAAGTCTCTCTCAGCTGTGGAGAAAGATGTTCCCACCATCCATCATAAAAAGGAAGAGGTGGATATGCCAGAGAGTAAGGAAACTATTGTTAAGGAAAATGGAGAGCGGCATAGCAATGGTACTGGAGCTGCCTATAGATCTGACAGAAGTGAAGAGAGGCAGCCTGATGTGATGGATGATCATTTGGGCAAATCTAGGAGTCGAAGCATGAGCCCGACACGACCCATGAGTAAGAGTATTAGTCCTAGGAGGACTAGGAGCAAGAGCCGTAGCATTACCCCGAAAAGAAGATTGAGCAAAACTCCCAGTCTTAGTAGAAGCCCTCCTCGTCCATCAAGGAGGAGTTTGAGCAGGAGTCCTGTTAGAGTTATTGGCAGGAGTCGAAGCAGAAGCATCAGCAGGAGCCCAGTAAGGGGCAGGAGGGGGAGAAATGTAAGTAGAAGTCCTGTGATAACTCGTCCTTTCAAAAGTGTCAGCAAGAGCCCTGTAAGATCCCGTCGGAGCAGGAGTTCTCCCAGAGCATCATCACGAAAAACAATCAGCAGAAGCCCTGTAAGAGTGTCAAGAAAGAGTGTAAGTCGCAGTCCAGTTAGATCACCTGCACGAAGCTTAAGCAAAAGTCCTGTAAGAGTGTCAAGAAAGAGTTTAAGTCGCAGTCCAGTTAGATCAACTGCAAGAAGCTTAAGCAGAAGCTCTGGTAGGGTCCCATCAAAGAGAAGCATTAGCCGGAGTCCCGTCAGGGCACCCAGTAGAAACAATCGCCGCAGTTATTCTAGGAGTCCAAGCCCTGTACGTAGAAGGACATCTCGTGGAGTTAGTTTGTCTCGGAGTGCTTCACCTGATGCTTCGCCAAAGCGTATTAGAAGGGGAAGAGGTTTTAGTGAACGATACTCCTATGCAAGAAGGTATAGAACCCCTTCTAGGTCTCCTGTGAGGTCTTACCGGTACAATGGAAGAATTGATCGTGACAGATATTCAAATTACAGAAGGTATTCCCCTAGGCGTTTCAGAAGCCCACCACCACGTGGAAGAACTCCTCCAAGGTACCGAAGGAGGAGCAGAACACCATCTGTCTCGCCCAGCCCACGCCACCGAGCTCGACGATATAGTAGAAGCCGCAGCCCAGTTCGCATTCGCTCCCCAGTTCGGAGTATTTCTCCAGGTCGATCTCGTCCCTCTCCACGTGTAGAAAGGCATTCATCATATTCCCGGAGCAGGAGTCCAGCAAAATCTAGGTCTTTTGTAGAATCACCATCTCCACGAAAAGCAAGTAGAGACAGGTCAGGGTCATCATCCAGAAGCCCAGATGGAAAGAAAGGCTTGGTCTCGTATGGTGACGGTTCTCCAGATTCGGGCCAAAGGTGA 2373 0.4585 MAKKKNPLVFMDVSIDGDPVERMVFELFYDVAPKTAENFRALSTGERGVSPNTGKSLHYKGSFFHCVIKGSIVKGGDFVNRNGTGGESIYGSNFPDESPRLKHDAPGLLSMAIADRHTFGSHFIITLKADHHLDSRKHVVFGKLVEGLQVLKRIEDVGDDEGHPTVTVKIINCGEYNDDGKKVNKSKTGKDASNEGNNHETRKKGKHKKSSKDRRKRRRYHSSETESSSDSDTESSETDSDSDSDLSSSSDISSSSDDRRRKRKRSKKDKYKRGKRRDKRRDRRRRRRDKRSKRRSKRDSGSDSDSESNSSSDGESLDTQQKELKRKDRSHKKAEVKSLSAVEKDVPTIHHKKEEVDMPESKETIVKENGERHSNGTGAAYRSDRSEERQPDVMDDHLGKSRSRSMSPTRPMSKSISPRRTRSKSRSITPKRRLSKTPSLSRSPPRPSRRSLSRSPVRVIGRSRSRSISRSPVRGRRGRNVSRSPVITRPFKSVSKSPVRSRRSRSSPRASSRKTISRSPVRVSRKSVSRSPVRSPARSLSKSPVRVSRKSLSRSPVRSTARSLSRSSGRVPSKRSISRSPVRAPSRNNRRSYSRSPSPVRRRTSRGVSLSRSASPDASPKRIRRGRGFSERYSYARRYRTPSRSPVRSYRYNGRIDRDRYSNYRRYSPRRFRSPPPRGRTPPRYRRRSRTPSVSPSPRHRARRYSRSRSPVRIRSPVRSISPGRSRPSPRVERHSSYSRSRSPAKSRSFVESPSPRKASRDRSGSSSRSPDGKKGLVSYGDGSPDSGQR 790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05252 790 MobiDBLite consensus disorder prediction 176 201 - -
Trre5g05252 790 MobiDBLite consensus disorder prediction 202 218 - -
Trre5g05252 790 MobiDBLite consensus disorder prediction 510 616 - -
Trre5g05252 790 MobiDBLite consensus disorder prediction 618 638 - -
Trre5g05252 790 MobiDBLite consensus disorder prediction 260 295 - -
Trre5g05252 790 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 10 175 IPR002130 GO:0000413|GO:0003755
Trre5g05252 790 MobiDBLite consensus disorder prediction 176 790 - -
Trre5g05252 790 MobiDBLite consensus disorder prediction 318 370 - -
Trre5g05252 790 FunFam Peptidyl-prolyl cis-trans isomerase CYP95 1 183 - -
Trre5g05252 790 MobiDBLite consensus disorder prediction 432 450 - -
Trre5g05252 790 MobiDBLite consensus disorder prediction 755 769 - -
Trre5g05252 790 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 11 174 IPR002130 GO:0000413|GO:0003755
Trre5g05252 790 MobiDBLite consensus disorder prediction 417 431 - -
Trre5g05252 790 SUPERFAMILY Cyclophilin-like 4 179 IPR029000 -
Trre5g05252 790 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 9 175 - -
Trre5g05252 790 Gene3D - 1 176 IPR029000 -
Trre5g05252 790 Coils Coil 317 337 - -
Trre5g05252 790 MobiDBLite consensus disorder prediction 651 666 - -
Trre5g05252 790 MobiDBLite consensus disorder prediction 382 403 - -
Trre5g05252 790 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 107 122 IPR002130 GO:0000413|GO:0003755
Trre5g05252 790 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 64 76 IPR002130 GO:0000413|GO:0003755
Trre5g05252 790 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 136 151 IPR002130 GO:0000413|GO:0003755
Trre5g05252 790 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 27 42 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05252 Trre-Chr5 53587999 53593649 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05252 25 171 U-box Gene Family AT5G67530 40.940 1.39e-19 91.7