Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05251 ATGGCAAAGAAAAAGAATCCTTTGGTGTTTATGGACGTGTCTATTGATGGGGATCCTGTTGAAAGGATGGTTTTTGAGCTTTTCTACGATGTTGCTCCCAAGACTGCAGAAAATTTCCGTGCATTATCTACAGGAGAGAGAGGTGTCAGTCCAAATACTGGAAAATCGCTGCATTACAAGGGTTCTTTCTTCCATTGTGTTATAAAAGGCTCTATTGTGAAGGGTGGTGATTTTGTCAATCGAAATGGGACTGGTGGAGAAAGCATATATGGTTCAAACTTCCCAGATGAGTCACCTAGGCTTAAGCACGACGCCCCTGGGCTTTTGTCGATGGCGATTGCGGACCGTCACACATTTGGTTCTCATTTTATTATCACTTTGAAAGCAGATCATCATCTTGATAGGAAGCATGTAGTCTTTGGGAAGCTTGTTGAAGGGCTTCAAGTATTGAAGAGAATTGAAGATGTGGGTGATGATGAAGGGCATCCAACTGTAACTGTTAAAATCATTAATTGTGGTGAATATAACGACGATGGGAAGAAGGTAAATAAATCAAAAACTGGAAAGGATGCATCCAACGAAGGGAATAATCATGAAACACGCAAGAAGGGAAAGCACAAAAAATCTTCAAAAGACCGAAGGAAGAGGAGAAGATACCACTCATCTGAAACCGAGAGTTCTTCAGATTCAGACACGGAATCTTCAGAAACTGATAGTGATTCTGACTCAGACCTGTCTTCATCATCTGATATAAGTTCATCTAGTGATGACCGGCGAAGAAAGAGAAAGAGATCCAAGAAAGATAAATATAAACGTGGAAAAAGGAGAGATAAACGCCGTGACAGAAGGCGAAGAAGAAGGGATAAGAGGTCGAAGCGTAGATCAAAAAGGGATTCTGGCAGCGATTCAGATAGTGAGAGTAACAGTAGCTCTGATGGTGAAAGTCTTGATACTCAACAGAAAGAGCTGAAGCGAAAAGACCGTTCTCATAAAAAAGCTGAAGTGAAGTCTCTCTCAGCTGTGGAGAAAGATGTTCCCACCATCCATCATAAAAAGGAAGAGGTGGATATGCCAGAGAGTAAGGAAACTATTGTTAAGGAAAATGGAGAGCGGCATAGCAATGGTACTGGAGCTGCCTATAGATCTGACAGAAGTGAAGAGAGGCAGCCTGATGTGATGGATGATCATTTGGGCAAATCTAGGAGTCGAAGCATGAGCCCGACACGACCCATGAGTAAGAGTATTAGTCCTAGGAGGACTAGGAGCAAGAGCCGTAGCATTACCCCGAAAAGAAGATTGAGCAAAACTCCCAGTCTTAGTAGAAGCCCTCCTCGTCCATCAAGGAGGAGTTTGAGCAGGAGTCCTGTTAGAGTTATTGGCAGGAGTCGAAGCAGAAGCATCAGCAGGAGCCCAGTAAGGGGCAGGAGGGGGAGAAATGTAAGTAGAAGTCCTGTGATAACTCGTCCTTTCAAAAGTGTCAGCAAGAGCCCTGTAAGATCCCGTCGGAGCAGGAGTTCTCCCAGAGCATCATCACGAAAAACAATCAGCAGAAGCCCTGTAAGAGTGTCAAGAAAGAGTGTAAGTCGCAGTCCAGTTAGATCACCTGCACGAAGCTTAAGCAAAAGTCCTGTAAGAGTGTCAAGAAAGAGTTTAAGTCGCAGTCCAGTTAGATCAACTGCAAGAAGCTTAAGCAGAAGCTCTGGTAGGGTCCCATCAAAGAGAAGCATTAGCCGGAGTCCCGTCAGGGCACCCAGTAGAAACAATCGCCGCAGTTATTCTAGGAGTCCAAGCCCTGTACGTAGAAGGACATCTCGTGGAGTTAGTTTGTCTCGGAGTGCTTCACCTGATGCTTCGCCAAAGCGTATTAGAAGGGGAAGAGGTTTTAGTGAACGATACTCCTATGCAAGAAGGTATAGAACCCCTTCTAGGTCTCCTGTGAGGTCTTACCGGTACAATGGAAGAATTGATCGTGACAGATATTCAAATTACAGAAGGTATTCCCCTAGGCGTTTCAGAAGCCCACCACCACGTGGAAGAACTCCTCCAAGGTACCGAAGGAGGAGCAGAACACCATCTGTCTCGCCCAGCCCACGCCACCGAGCTCGACGATATAGTAGAAGCCGCAGCCCAGTTCGCATTCGCTCCCCAGTTCGGAGTATTTCTCCAGGTCGATCTCGTCCCTCTCCACGTGTAGAAAGGCATTCATCATATTCCCGGAGCAGGAGTCCAGCAAAATCTAGGTCTTTTGTAGAATCACCATCTCCACGAAAAGCAAGTAGAGACAGGTCAGGGTCATCATCCAGAAGCCCAGATGGAAAGAAAGGCTTGGTCTCGTATGGTGACGGTTCTCCAGATTCGGGCCAAAGGTGA 2370 0.4582 MAKKKNPLVFMDVSIDGDPVERMVFELFYDVAPKTAENFRALSTGERGVSPNTGKSLHYKGSFFHCVIKGSIVKGGDFVNRNGTGGESIYGSNFPDESPRLKHDAPGLLSMAIADRHTFGSHFIITLKADHHLDRKHVVFGKLVEGLQVLKRIEDVGDDEGHPTVTVKIINCGEYNDDGKKVNKSKTGKDASNEGNNHETRKKGKHKKSSKDRRKRRRYHSSETESSSDSDTESSETDSDSDSDLSSSSDISSSSDDRRRKRKRSKKDKYKRGKRRDKRRDRRRRRRDKRSKRRSKRDSGSDSDSESNSSSDGESLDTQQKELKRKDRSHKKAEVKSLSAVEKDVPTIHHKKEEVDMPESKETIVKENGERHSNGTGAAYRSDRSEERQPDVMDDHLGKSRSRSMSPTRPMSKSISPRRTRSKSRSITPKRRLSKTPSLSRSPPRPSRRSLSRSPVRVIGRSRSRSISRSPVRGRRGRNVSRSPVITRPFKSVSKSPVRSRRSRSSPRASSRKTISRSPVRVSRKSVSRSPVRSPARSLSKSPVRVSRKSLSRSPVRSTARSLSRSSGRVPSKRSISRSPVRAPSRNNRRSYSRSPSPVRRRTSRGVSLSRSASPDASPKRIRRGRGFSERYSYARRYRTPSRSPVRSYRYNGRIDRDRYSNYRRYSPRRFRSPPPRGRTPPRYRRRSRTPSVSPSPRHRARRYSRSRSPVRIRSPVRSISPGRSRPSPRVERHSSYSRSRSPAKSRSFVESPSPRKASRDRSGSSSRSPDGKKGLVSYGDGSPDSGQR 789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05251 789 Gene3D - 1 175 IPR029000 -
Trre5g05251 789 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 107 122 IPR002130 GO:0000413|GO:0003755
Trre5g05251 789 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 135 150 IPR002130 GO:0000413|GO:0003755
Trre5g05251 789 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 64 76 IPR002130 GO:0000413|GO:0003755
Trre5g05251 789 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 122 134 IPR002130 GO:0000413|GO:0003755
Trre5g05251 789 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 27 42 IPR002130 GO:0000413|GO:0003755
Trre5g05251 789 MobiDBLite consensus disorder prediction 650 665 - -
Trre5g05251 789 MobiDBLite consensus disorder prediction 317 369 - -
Trre5g05251 789 FunFam Peptidyl-prolyl cis-trans isomerase CYP95 1 182 - -
Trre5g05251 789 MobiDBLite consensus disorder prediction 175 200 - -
Trre5g05251 789 MobiDBLite consensus disorder prediction 431 449 - -
Trre5g05251 789 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 11 173 IPR002130 GO:0000413|GO:0003755
Trre5g05251 789 MobiDBLite consensus disorder prediction 754 768 - -
Trre5g05251 789 MobiDBLite consensus disorder prediction 201 217 - -
Trre5g05251 789 MobiDBLite consensus disorder prediction 509 615 - -
Trre5g05251 789 MobiDBLite consensus disorder prediction 416 430 - -
Trre5g05251 789 MobiDBLite consensus disorder prediction 617 637 - -
Trre5g05251 789 MobiDBLite consensus disorder prediction 259 294 - -
Trre5g05251 789 Coils Coil 316 336 - -
Trre5g05251 789 MobiDBLite consensus disorder prediction 175 789 - -
Trre5g05251 789 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 10 174 IPR002130 GO:0000413|GO:0003755
Trre5g05251 789 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 9 174 - -
Trre5g05251 789 MobiDBLite consensus disorder prediction 381 402 - -
Trre5g05251 789 SUPERFAMILY Cyclophilin-like 4 178 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05251 Trre-Chr5 53587999 53593649 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05251 25 170 U-box Gene Family AT5G67530 41.216 4.67e-21 96.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05251 K09566 - jre:109001815 559.296