Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05250 ATGAAGACTATGGCAAAGAAAAAGAATCCTTTGGTGTTTATGGACGTGTCTATTGATGGGGATCCTGTTGAAAGGATGGTTTTTGAGCTTTTCTACGATGTTGCTCCCAAGACTGCAGAAAATTTCCGTGCATTATCTACAGGAGAGAGAGGTGTCAGTCCAAATACTGGAAAATCGCTGCATTACAAGGGTTCTTTCTTCCATTGTGTTATAAAAGGCTCTATTGTGAAGGGTGGTGATTTTGTCAATCGAAATGGGACTGGTGGAGAAAGCATATATGGTTCAAACTTCCCAGATGAGTCACCTAGGCTTAAGCACGACGCCCCTGGGCTTTTGTCGATGGCGATTGCGGACCGTCACACATTTGGTTCTCATTTTATTATCACTTTGAAAGCAGATCATCATCTTGATAGGAAGCATGTAGTCTTTGGGAAGCTTGTTGAAGGGCTTCAAGTATTGAAGAGAATTGAAGATGTGGGTGATGATGAAGGGCATCCAACTGTAACTGTTAAAATCATTAATTGTGGTGAATATAACGACGATGGGAAGAAGGTAAATAAATCAAAAACTGGAAAGGATGCATCCAACGAAGGGAATAATCATGAAACACGCAAGAAGGGAAAGCACAAAAAATCTTCAAAAGACCGAAGGAAGAGGAGAAGATACCACTCATCTGAAACCGAGAGTTCTTCAGATTCAGACACGGAATCTTCAGAAACTGATAGTGATTCTGACTCAGACCTGTCTTCATCATCTGATATAAGTTCATCTAGTGATGACCGGCGAAGAAAGAGAAAGAGATCCAAGAAAGATAAATATAAACGTGGAAAAAGGAGAGATAAACGCCGTGACAGAAGGCGAAGAAGAAGGGATAAGAGGTCGAAGCGTAGATCAAAAAGGGATTCTGGCAGCGATTCAGATAGTGAGAGTAACAGTAGCTCTGATGGTGAAAGTCTTGATACTCAACAGAAAGAGCTGAAGCGAAAAGACCGTTCTCATAAAAAAGCTGAAGTGAAGTCTCTCTCAGCTGTGGAGAAAGATGTTCCCACCATCCATCATAAAAAGGAAGAGGTGGATATGCCAGAGAGTAAGGAAACTATTGTTAAGGAAAATGGAGAGCGGCATAGCAATGGTACTGGAGCTGCCTATAGATCTGACAGAAGTGAAGAGAGGCAGCCTGATGTGATGGATGATCATTTGGGCAAATCTAGGAGTCGAAGCATGAGCCCGACACGACCCATGAGTAAGAGTATTAGTCCTAGGAGGACTAGGAGCAAGAGCCGTAGCATTACCCCGAAAAGAAGATTGAGCAAAACTCCCAGTCTTAGTAGAAGCCCTCCTCGTCCATCAAGGAGGAGTTTGAGCAGGAGTCCTGTTAGAGTTATTGGCAGGAGTCGAAGCAGAAGCATCAGCAGGAGCCCAGTAAGGGGCAGGAGGGGGAGAAATGTAAGTAGAAGTCCTGTGATAACTCGTCCTTTCAAAAGTGTCAGCAAGAGCCCTGTAAGATCCCGTCGGAGCAGGAGTTCTCCCAGAGCATCATCACGAAAAACAATCAGCAGAAGCCCTGTAAGAGTGTCAAGAAAGAGTAGTTTAAGTCGCAGTCCAGTTAGATCAACTGCAAGAAGCTTAAGCAGAAGCTCTGGTAGGGTCCCATCAAAGAGAAGCATTAGCCGGAGTCCCGTCAGGGCACCCAGTAGAAACAATCGCCGCAGTTATTCTAGGAGTCCAAGCCCTGTACGTAGAAGGACATCTCGTGGAGTTAGTTTGTCTCGGAGTGCTTCACCTGATGCTTCGCCAAAGCGTATTAGAAGGGGAAGAGGTTTTAGTGAACGATACTCCTATGCAAGAAGGTATAGAACCCCTTCTAGGTCTCCTGTGAGGTCTTACCGGTACAATGGAAGAATTGATCGTGACAGATATTCAAATTACAGAAGGTATTCCCCTAGGCGTTTCAGAAGCCCACCACCACGTGGAAGAACTCCTCCAAGGTACCGAAGGAGGAGCAGAACACCATCTGTCTCGCCCAGCCCACGCCACCGAGCTCGACGATATAGTAGAAGCCGCAGCCCAGTTCGCATTCGCTCCCCAGTTCGGAGTATTTCTCCAGGTCGATCTCGTCCCTCTCCACGTGTAGAAAGGCATTCATCATATTCCCGGAGCAGGAGTCCAGCAAAATCTAGGTCTTTTGTAGAATCACCATCTCCACGAAAAGCAAGTAGAGACAGGTCAGGGTCATCATCCAGAAGCCCAGATGGAAAGAAAGGCTTGGTCTCGTATGGTGACGGTTCTCCAGATTCGGGCCAAAGGTGA 2310 0.458 MKTMAKKKNPLVFMDVSIDGDPVERMVFELFYDVAPKTAENFRALSTGERGVSPNTGKSLHYKGSFFHCVIKGSIVKGGDFVNRNGTGGESIYGSNFPDESPRLKHDAPGLLSMAIADRHTFGSHFIITLKADHHLDRKHVVFGKLVEGLQVLKRIEDVGDDEGHPTVTVKIINCGEYNDDGKKVNKSKTGKDASNEGNNHETRKKGKHKKSSKDRRKRRRYHSSETESSSDSDTESSETDSDSDSDLSSSSDISSSSDDRRRKRKRSKKDKYKRGKRRDKRRDRRRRRRDKRSKRRSKRDSGSDSDSESNSSSDGESLDTQQKELKRKDRSHKKAEVKSLSAVEKDVPTIHHKKEEVDMPESKETIVKENGERHSNGTGAAYRSDRSEERQPDVMDDHLGKSRSRSMSPTRPMSKSISPRRTRSKSRSITPKRRLSKTPSLSRSPPRPSRRSLSRSPVRVIGRSRSRSISRSPVRGRRGRNVSRSPVITRPFKSVSKSPVRSRRSRSSPRASSRKTISRSPVRVSRKSSLSRSPVRSTARSLSRSSGRVPSKRSISRSPVRAPSRNNRRSYSRSPSPVRRRTSRGVSLSRSASPDASPKRIRRGRGFSERYSYARRYRTPSRSPVRSYRYNGRIDRDRYSNYRRYSPRRFRSPPPRGRTPPRYRRRSRTPSVSPSPRHRARRYSRSRSPVRIRSPVRSISPGRSRPSPRVERHSSYSRSRSPAKSRSFVESPSPRKASRDRSGSSSRSPDGKKGLVSYGDGSPDSGQR 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05250 769 MobiDBLite consensus disorder prediction 512 595 - -
Trre5g05250 769 MobiDBLite consensus disorder prediction 630 645 - -
Trre5g05250 769 FunFam Peptidyl-prolyl cis-trans isomerase CYP95 4 185 - -
Trre5g05250 769 MobiDBLite consensus disorder prediction 434 452 - -
Trre5g05250 769 MobiDBLite consensus disorder prediction 419 433 - -
Trre5g05250 769 MobiDBLite consensus disorder prediction 734 748 - -
Trre5g05250 769 Coils Coil 319 339 - -
Trre5g05250 769 MobiDBLite consensus disorder prediction 384 405 - -
Trre5g05250 769 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 14 176 IPR002130 GO:0000413|GO:0003755
Trre5g05250 769 MobiDBLite consensus disorder prediction 597 617 - -
Trre5g05250 769 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 12 177 - -
Trre5g05250 769 MobiDBLite consensus disorder prediction 178 203 - -
Trre5g05250 769 SUPERFAMILY Cyclophilin-like 5 181 IPR029000 -
Trre5g05250 769 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 13 177 IPR002130 GO:0000413|GO:0003755
Trre5g05250 769 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 110 125 IPR002130 GO:0000413|GO:0003755
Trre5g05250 769 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 138 153 IPR002130 GO:0000413|GO:0003755
Trre5g05250 769 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 125 137 IPR002130 GO:0000413|GO:0003755
Trre5g05250 769 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 67 79 IPR002130 GO:0000413|GO:0003755
Trre5g05250 769 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 30 45 IPR002130 GO:0000413|GO:0003755
Trre5g05250 769 MobiDBLite consensus disorder prediction 204 220 - -
Trre5g05250 769 MobiDBLite consensus disorder prediction 262 297 - -
Trre5g05250 769 MobiDBLite consensus disorder prediction 178 769 - -
Trre5g05250 769 MobiDBLite consensus disorder prediction 320 372 - -
Trre5g05250 769 Gene3D - 1 178 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05250 Trre-Chr5 53587999 53593658 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05250 28 173 U-box Gene Family AT5G67530 41.216 4.14e-21 96.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05250 K09566 - jre:109001815 550.051