Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05249 ATGAAGACTATGGCAAAGAAAAAGAATCCTTTGGTGTTTATGGACGTGTCTATTGATGGGGATCCTGTTGAAAGGATGGTTTTTGAGCTTTTCTACGATGTTGCTCCCAAGACTGCAGAAAATTTCCGTGCATTATCTACAGGAGAGAGAGGTGTCAGTCCAAATACTGGAAAATCGCTGCATTACAAGGGTTCTTTCTTCCATTGTGTTATAAAAGGCTCTATTGTGAAGGGTGGTGATTTTGTCAATCGAAATGGGACTGGTGGAGAAAGCATATATGGTTCAAACTTCCCAGATGAGTCACCTAGGCTTAAGCACGACGCCCCTGGGCTTTTGTCGATGGCGATTGCGGACCGTCACACATTTGGTTCTCATTTTATTATCACTTTGAAAGCAGATCATCATCTTGATAGGAAGCATGTAGTCTTTGGGAAGCTTGTTGAAGGGCTTCAAGTATTGAAGAGAATTGAAGATGTGGGTGATGATGAAGGGCATCCAACTGTAACTGTTAAAATCATTAATTGTGGTGAATATAACGACGGGAATAATCATGAAACACGCAAGAAGGGAAAGCACAAAAAATCTTCAAAAGACCGAAGGAAGAGGAGAAGATACCACTCATCTGAAACCGAGAGTTCTTCAGATTCAGACACGGAATCTTCAGAAACTGATAGTGATTCTGACTCAGACCTGTCTTCATCATCTGATATAAGTTCATCTAGTGATGACCGGCGAAGAAAGAGAAAGAGATCCAAGAAAGATAAATATAAACGTGGAAAAAGGAGAGATAAACGCCGTGACAGAAGGCGAAGAAGAAGGGATAAGAGGTCGAAGCGTAGATCAAAAAGGGATTCTGGCAGCGATTCAGATAGTGAGAGTAACAGTAGCTCTGATGGTGAAAGTCTTGATACTCAACAGAAAGAGCTGAAGCGAAAAGACCGTTCTCATAAAAAAGCTGAAGTGAAGTCTCTCTCAGCTGTGGAGAAAGATGTTCCCACCATCCATCATAAAAAGGAAGAGGTGGATATGCCAGAGAGTAAGGAAACTATTGTTAAGGAAAATGGAGAGCGGCATAGCAATGGTACTGGAGCTGCCTATAGATCTGACAGAAGTGAAGAGAGGCAGCCTGATGTGATGGATGATCATTTGGGCAAATCTAGGAGTCGAAGCATGAGCCCGACACGACCCATGAGTAAGAGTATTAGTCCTAGGAGGACTAGGAGCAAGAGCCGTAGCATTACCCCGAAAAGAAGATTGAGCAAAACTCCCAGTCTTAGTAGAAGCCCTCCTCGTCCATCAAGGAGGAGTTTGAGCAGGAGTCCTGTTAGAGTTATTGGCAGGAGTCGAAGCAGAAGCATCAGCAGGAGCCCAGTAAGGGGCAGGAGGGGGAGAAATGTAAGTAGAAGTCCTGTGATAACTCGTCCTTTCAAAAGTGTCAGCAAGAGCCCTGTAAGATCCCGTCGGAGCAGGAGTTCTCCCAGAGCATCATCACGAAAAACAATCAGCAGAAGCCCTGTAAGAGTGTCAAGAAAGAGTAGTTTAAGTCGCAGTCCAGTTAGATCAACTGCAAGAAGCTTAAGCAGAAGCTCTGGTAGGGTCCCATCAAAGAGAAGCATTAGCCGGAGTCCCGTCAGGGCACCCAGTAGAAACAATCGCCGCAGTTATTCTAGGAGTCCAAGCCCTGTACGTAGAAGGACATCTCGTGGAGTTAGTTTGTCTCGGAGTGCTTCACCTGATGCTTCGCCAAAGCGTATTAGAAGGGGAAGAGGTTTTAGTGAACGATACTCCTATGCAAGAAGGTATAGAACCCCTTCTAGGTCTCCTGTGAGGTCTTACCGGTACAATGGAAGAATTGATCGTGACAGATATTCAAATTACAGAAGGTATTCCCCTAGGCGTTTCAGAAGCCCACCACCACGTGGAAGAACTCCTCCAAGGTACCGAAGGAGGAGCAGAACACCATCTGTCTCGCCCAGCCCACGCCACCGAGCTCGACGATATAGTAGAAGCCGCAGCCCAGTTCGCATTCGCTCCCCAGTTCGGAGTATTTCTCCAGGTCGATCTCGTCCCTCTCCACGTGTAGAAAGGCATTCATCATATTCCCGGAGCAGGAGTCCAGCAAAATCTAGGTCTTTTGTAGAATCACCATCTCCACGAAAAGCAAGTAGAGACAGGTCAGGGTCATCATCCAGAAGCCCAGATGGAAAGAAAGGCTTGGTCTCGTATGGTGACGGTTCTCCAGATTCGGGCCAAAGGTGA 2259 0.4599 MKTMAKKKNPLVFMDVSIDGDPVERMVFELFYDVAPKTAENFRALSTGERGVSPNTGKSLHYKGSFFHCVIKGSIVKGGDFVNRNGTGGESIYGSNFPDESPRLKHDAPGLLSMAIADRHTFGSHFIITLKADHHLDRKHVVFGKLVEGLQVLKRIEDVGDDEGHPTVTVKIINCGEYNDGNNHETRKKGKHKKSSKDRRKRRRYHSSETESSSDSDTESSETDSDSDSDLSSSSDISSSSDDRRRKRKRSKKDKYKRGKRRDKRRDRRRRRRDKRSKRRSKRDSGSDSDSESNSSSDGESLDTQQKELKRKDRSHKKAEVKSLSAVEKDVPTIHHKKEEVDMPESKETIVKENGERHSNGTGAAYRSDRSEERQPDVMDDHLGKSRSRSMSPTRPMSKSISPRRTRSKSRSITPKRRLSKTPSLSRSPPRPSRRSLSRSPVRVIGRSRSRSISRSPVRGRRGRNVSRSPVITRPFKSVSKSPVRSRRSRSSPRASSRKTISRSPVRVSRKSSLSRSPVRSTARSLSRSSGRVPSKRSISRSPVRAPSRNNRRSYSRSPSPVRRRTSRGVSLSRSASPDASPKRIRRGRGFSERYSYARRYRTPSRSPVRSYRYNGRIDRDRYSNYRRYSPRRFRSPPPRGRTPPRYRRRSRTPSVSPSPRHRARRYSRSRSPVRIRSPVRSISPGRSRPSPRVERHSSYSRSRSPAKSRSFVESPSPRKASRDRSGSSSRSPDGKKGLVSYGDGSPDSGQR 752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05249 752 Coils Coil 302 322 - -
Trre5g05249 752 MobiDBLite consensus disorder prediction 717 731 - -
Trre5g05249 752 MobiDBLite consensus disorder prediction 176 752 - -
Trre5g05249 752 MobiDBLite consensus disorder prediction 367 388 - -
Trre5g05249 752 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 14 176 IPR002130 GO:0000413|GO:0003755
Trre5g05249 752 Gene3D - 1 178 IPR029000 -
Trre5g05249 752 MobiDBLite consensus disorder prediction 495 578 - -
Trre5g05249 752 MobiDBLite consensus disorder prediction 613 628 - -
Trre5g05249 752 SUPERFAMILY Cyclophilin-like 5 181 IPR029000 -
Trre5g05249 752 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 12 177 - -
Trre5g05249 752 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 13 177 IPR002130 GO:0000413|GO:0003755
Trre5g05249 752 MobiDBLite consensus disorder prediction 303 355 - -
Trre5g05249 752 MobiDBLite consensus disorder prediction 580 600 - -
Trre5g05249 752 MobiDBLite consensus disorder prediction 417 435 - -
Trre5g05249 752 FunFam Peptidyl-prolyl cis-trans isomerase CYP95 4 185 - -
Trre5g05249 752 MobiDBLite consensus disorder prediction 187 203 - -
Trre5g05249 752 MobiDBLite consensus disorder prediction 245 280 - -
Trre5g05249 752 MobiDBLite consensus disorder prediction 402 416 - -
Trre5g05249 752 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 110 125 IPR002130 GO:0000413|GO:0003755
Trre5g05249 752 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 67 79 IPR002130 GO:0000413|GO:0003755
Trre5g05249 752 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 138 153 IPR002130 GO:0000413|GO:0003755
Trre5g05249 752 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 30 45 IPR002130 GO:0000413|GO:0003755
Trre5g05249 752 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 125 137 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05249 Trre-Chr5 53587999 53593658 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05249 28 173 U-box Gene Family AT5G67530 41.216 3.69e-21 96.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05249 K09566 - jre:109001815 521.931