Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05247 ATGTCTGTATCATCGTCATCATCTCGTGTTTTTGACACCATTAATGAATGTCTCACCCTGGTGCAATCGGATTCTCATGAAGCTCAGGAGAAAGGCCTTCAAACATTGGCAGCCATCACCAAGGTAAGTCCCCAAAACAGAACTTTGCTAGCTCAAACAGATGGAGTAATCTCAACATTAGCCACACTCACAAATGCTTCCTCCTCCATTATCCAAACCCTTTCCTTGTTGATCCTCTTTAACCTTTCCCTCAACTCTGATCTAAAGCTATCTCTTGCAGATATGGAAACCATTTATCACCTCAATTCCCTCATTAACTCATCATTATCATCATGTTCTCTTGATTCATGCAAACTTGCCTCTTCATTGATTTGTAGTTTAGCTATGTTTGACAAAAACAAAGCCAAATTTGGAGTAGCAGGTACAGTTCAGTTGCTGGTGAAGGCTATTGAAAACTCTCTTCTTGATTCTTCTGATGCTCATCACCTTTTGAGTTCTTTAGCTGAACTTGTTCAGTTTCATGGAAATTGTACTTTGGCCGTTCGAGGCGGAGCGGTTCCAGTGCTGCTACAAGTTGTAAAGAGCACTGATAATAATGAGGATTTAGCTGGAACATCTCTTACTGTTCTTGGACTCCTAGTGAGGTTTGATGAAGGGTTGAATGCAGTGAAAAAAACAAATGAGATATTAAGTTCAATGTTAAGTGTATTGAAAGGAAGGTCTTTGTTGTGTAAAGAAGGTGCAGTTGATATTCTTGTTAGACTTTTTGATGATAGTGAAGAATGTGTTAGAGAGGCTTTGTTGTTATCAGAATTCTCAAGTGTGTTGGCTGATCTTTCTGTGAGGGGTTCTGCAAGAGTGAGAGATAAGGTTGATTTGTTAATGAGGAAGATTGCTAAGAGTGAAAGTAACAAAACAAAAAGAGGAGAGGGGAAAGTCGTGGGAACGTGGCCAACAAAGGCACATCATGAAGAAAAGCAAAAAAGGCCATATGCTTTTGTAGATTCTCCAATCTTATTATTCTCTTTGCCTCTTTCTCTGCATTTTTTGCTTCATTTCTTAAACTCAACATAA 1074 0.3901 MSVSSSSSRVFDTINECLTLVQSDSHEAQEKGLQTLAAITKVSPQNRTLLAQTDGVISTLATLTNASSSIIQTLSLLILFNLSLNSDLKLSLADMETIYHLNSLINSSLSSCSLDSCKLASSLICSLAMFDKNKAKFGVAGTVQLLVKAIENSLLDSSDAHHLLSSLAELVQFHGNCTLAVRGGAVPVLLQVVKSTDNNEDLAGTSLTVLGLLVRFDEGLNAVKKTNEILSSMLSVLKGRSLLCKEGAVDILVRLFDDSEECVREALLLSEFSSVLADLSVRGSARVRDKVDLLMRKIAKSESNKTKRGEGKVVGTWPTKAHHEEKQKRPYAFVDSPILLFSLPLSLHFLLHFLNST 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05247 357 PANTHER U BOX DOMAIN-CONTAINING 14 296 - -
Trre5g05247 357 Gene3D - 3 335 IPR011989 -
Trre5g05247 357 SUPERFAMILY ARM repeat 13 304 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05247 Trre-Chr5 53581928 53587162 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05247 39 300 U-box Gene Family AT3G46510 25.475 2.16e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05247 - - gmx:121174819 380.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05247 5 53581928 53587162 Trre5g05247 5 53581928 53587162 ECH