Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05230 ATGGCAGTGGCGATTCAATGTCTATCATGTGCTCGTTTCGTCACTGTTGGAGGTAACCGATCCTTTCCACTGCAACGAAAACCTCTTCTCTTCTCCTCCACTCTTTCTTCTCCCTCTCGGAATCTCTACTCCTCAATTGTCACCGCCTCTTCCAAAAAGAAAAACAATAAGAAAAAATTATCACATGTTACCGAAGGGAACGATGAAGAGGAAGACGCATTTGAGTTACTGTTCAAGCAACTCGAAGAAGATCTTAAAAACGATGGTTCATCAAAAGACGATGGCGATGATGATGATGATATAACTGAAGAAGAAATGGCTTTGTTTGAACGTGAATTAGAAGGTTTGTTAGGTGAATTTGAGGCTGAATTGTCGAACTCGGATAGCAGTGAAACAGAAGAACCTGATAATGATGCTGAAAAAAGTAGTAGTGATGGAAATGAGAATCCACTGAAGCTTAGAACTTGGCAATTGAATAGATTGGCTAGAGCCTTGAAAACTGGACGCCGCAAAATAAGTATAAAAACCCTTGCTGCTGATCTCTGTCTTGATAGACATCTTGTTCTTAATTTGCTCCGTAACCCTCCTCCGAATCTTCTGATGCTGAGCCTATCGATACCTGATGAACCCACACCATCAGGAATAGTACCTGAAAATACTCCTGGGGAGACTCTTTATAAAGAAACAAGTGCAGATAATGCAGATCATGAAGAATCTGAATCCAAGTCCAACTTACCTATTCATACCATGCAACAGAATTGGTCATCTCGAAAGAGATTGAAGAAGACCCAGCTTGACACTCTGGAGAGAGTTTACATGAGATCAAAGCGGCCCACTAATGCAATGATTAGTAATATTGTGCAAGTTACAAACATTCCGCGGAAAACAGTTATTAAGTGGTTTGAAGAAAAACGTGCCGAGGAGGGAGTTCCTGAACGTCGTCTTCCTTATCAACACTCTGCTCATGAAACTGGTTGA 978 0.4121 MAVAIQCLSCARFVTVGGNRSFPLQRKPLLFSSTLSSPSRNLYSSIVTASSKKKNNKKKLSHVTEGNDEEEDAFELLFKQLEEDLKNDGSSKDDGDDDDDITEEEMALFERELEGLLGEFEAELSNSDSSETEEPDNDAEKSSSDGNENPLKLRTWQLNRLARALKTGRRKISIKTLAADLCLDRHLVLNLLRNPPPNLLMLSLSIPDEPTPSGIVPENTPGETLYKETSADNADHEESESKSNLPIHTMQQNWSSRKRLKKTQLDTLERVYMRSKRPTNAMISNIVQVTNIPRKTVIKWFEEKRAEEGVPERRLPYQHSAHETG 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05230 325 PANTHER ZINC-FINGERS AND HOMEOBOXES RELATED 49 318 - -
Trre5g05230 325 MobiDBLite consensus disorder prediction 305 325 - -
Trre5g05230 325 ProSiteProfiles 'Homeobox' domain profile. 251 311 IPR001356 GO:0003677
Trre5g05230 325 SMART HOX_1 253 315 IPR001356 GO:0003677
Trre5g05230 325 Gene3D - 252 314 - -
Trre5g05230 325 SUPERFAMILY Homeodomain-like 252 319 IPR009057 -
Trre5g05230 325 Pfam Homeodomain 256 307 IPR001356 GO:0003677
Trre5g05230 325 CDD homeodomain 254 306 IPR001356 GO:0003677
Trre5g05230 325 MobiDBLite consensus disorder prediction 122 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05230 Trre-Chr5 53488453 53491173 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Trre5g05230 Homeodomain 5.4e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05230 - - gmx:100798718 319.316
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05230 5 53488453 53491173 Trre5g05230 5 53488453 53491173 ECH