Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05228 ATGGCAAGGATCAAGGTTCATGAGTTGAGGCAGAAAACCAAAGTTGATCTCTTGGCTCAGCTCAAAGACCTCAAGACTGAACTCGCCTTACTCCGTATTGCTAAGGTCACCGGTGGTGCACCTAACAAGCTCTCCAAGATTATGGTGGTGAGGCGTTCTATTGCTCAGGTTTTGACCGTGATTTCTCAGAAGCAGAAGGCTGCATTGAGGGAAGTTTACGGAACAAGAAGTAAGCTATTAAAGCATAGGAGTGTATAG 258 0.4574 MARIKVHELRQKTKVDLLAQLKDLKTELALLRIAKVTGGAPNKLSKIMVVRRSIAQVLTVISQKQKAALREVYGTRSKLLKHRSV 85
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05228 85 NCBIfam 50S ribosomal protein L29 8 64 IPR001854 GO:0003735|GO:0005840|GO:0006412
Trre5g05228 85 SUPERFAMILY Ribosomal protein L29 (L29p) 4 65 IPR036049 GO:0003735|GO:0005840|GO:0006412
Trre5g05228 85 Hamap 50S ribosomal protein L29 [rpmC]. 4 64 IPR001854 GO:0003735|GO:0005840|GO:0006412
Trre5g05228 85 Gene3D - 1 78 IPR036049 GO:0003735|GO:0005840|GO:0006412
Trre5g05228 85 Pfam Ribosomal L29 protein 8 64 IPR001854 GO:0003735|GO:0005840|GO:0006412
Trre5g05228 85 FunFam 60S ribosomal protein L35 1 81 - -
Trre5g05228 85 Coils Coil 14 34 - -
Trre5g05228 85 CDD Ribosomal_L29_HIP 8 64 - -
Trre5g05228 85 PANTHER 60S RIBOSOMAL PROTEIN L35 1 76 IPR045059 GO:0000463|GO:0022625
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05228 Trre-Chr5 53451638 53451895 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05228 1 76 Cytoplasmic Ribosomal Protein Gene Family AT2G39390 78.947 9.45e-38 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05228 K02918 - rvl:131314800 126.716