Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05207 ATGGCAGAAACAAAGGACGAAGCTTACGAGGAAGAGCTTCTCGACTACGAGGAGGAAGAAGACAAAGCTCCCGACACCAACGGAGCTAAAGTCAACGGTGAAGCTACCAAGAAGGGCTATGTTGGAATTCACAGTTCAGGATTTAGAGACTTTCTTCTCAAACCAGAGCTTCTTCGGGCTATCGTCGATTCCGGATTCGAACATCCATCTGAAGTGCAACATGAGTGCATACCTCAAGCAATCCTTGGAATGGATGTAATTTGTCAAGCTAAATCTGGAATGGGAAAGACTGCTGTCTTTGTTCTCTCAACTTTGCAGCAGATTGATCCTGTTCCAGGCCAAGTTTCTGCACTTGTTCTGTGTCATACAAGAGAACTAGCTTACCAGATATGTCACGAGTTTGAGAGGTTCAGTACCTACTTACCCGATCTGAAGGTTGCTGTCTTTTATGGTGGGGTCAATATCAAAGTTCACAAGGATCTATTGAAAAATGAGTGCCCTCAGATTGTTGTTGGAACGCCTGGAAGAATACTTGCATTGGCTAGGGAGAAGAATCTTTCTTTGAAGAATGTTAGGCATTTTGTTTTAGATGAATGCGATAAGATGCTCGAATCACTGGACATGAGGAAAGACGTTCAAGACATTTTCAAGTTGACTCCCCATGATAAGCAAGTTATGATGTTTTCAGCAACACTCAGCAAGGAAATCCGTCCGGTCTGCAAAAAATTTATGCAAGATCCTATGGAAATTTATGTTGATGATGAAGCCAAGTTGACCCTTCATGGACTTGTTCAGCACTACATCAAACTGAAAGAGGAGGAGAAAAACCGCAAGTTGAATGATCTTCTTGATGCGCTAGACTTCAACCAAGTTGTTATCTTCGTGAAAAGTGTCAGTAGAGCAGCTGAGCTGGACAGACTACTTATTGAGTGCAATTTTCCATCAATATGCATTCACTCTGGCATGTCCCAGGAAGAAAGGTTAAAGCGTTATAGAGGTTTCAAGGAGGGGCACTCAAGGATTCTTGTTGCAACAGATTTGGTTGGCAGAGGGATTGACATTGAACGTGTCAACATTGTTATAAACTATGACATGCCTGATTCTGCAGACACTTACTTGCACAGGGTTGGCCGAGCTGGAAGATTTGGTACCAAAGGCCTTGCAATCACATTTGTTTCTTGTTCTAGTGATGTTGATGTTCTCAACAATGTTCAGTCCAGGTTTGAAATAGATATAAAGCAGCTTCCTGAGCAGATTGATACCTCTACCTACACCTCTTCTGACTTGGTTTCAACCATTTGCAGTGCCGTCTTAGAGGATATTGCTTTGGGGCAATGCTTGAGCTGTTTGGATGGTATGAGTACCTGTACCCTCATCTCCGGAACCTTGTCACAGTTTTCTGAAAAAGGCCAGCTTGATGATTTAACCGCCTTGTTACTTGGACTAAGCTACTTTACCATTGATTGGTGTTAG 1473 0.4277 MAETKDEAYEEELLDYEEEEDKAPDTNGAKVNGEATKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVPGQVSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHKDLLKNECPQIVVGTPGRILALAREKNLSLKNVRHFVLDECDKMLESLDMRKDVQDIFKLTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLKEEEKNRKLNDLLDALDFNQVVIFVKSVSRAAELDRLLIECNFPSICIHSGMSQEERLKRYRGFKEGHSRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCSSDVDVLNNVQSRFEIDIKQLPEQIDTSTYTSSDLVSTICSAVLEDIALGQCLSCLDGMSTCTLISGTLSQFSEKGQLDDLTALLLGLSYFTIDWC 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05207 490 CDD DEADc_DDX39 45 252 - -
Trre5g05207 490 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 77 250 IPR014001 -
Trre5g05207 490 MobiDBLite consensus disorder prediction 1 22 - -
Trre5g05207 490 SMART ultradead3 65 266 IPR014001 -
Trre5g05207 490 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 46 74 IPR014014 GO:0003724
Trre5g05207 490 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 44 402 - -
Trre5g05207 490 Pfam DEAD/DEAH box helicase 71 236 IPR011545 GO:0003676|GO:0005524
Trre5g05207 490 SMART helicmild6 302 383 IPR001650 -
Trre5g05207 490 Gene3D - 42 258 IPR027417 -
Trre5g05207 490 MobiDBLite consensus disorder prediction 1 31 - -
Trre5g05207 490 Pfam Helicase conserved C-terminal domain 276 383 IPR001650 -
Trre5g05207 490 Gene3D - 259 427 IPR027417 -
Trre5g05207 490 FunFam DEAD-box ATP-dependent RNA helicase 259 427 - -
Trre5g05207 490 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 115 396 IPR027417 -
Trre5g05207 490 CDD SF2_C_DEAD 263 392 - -
Trre5g05207 490 FunFam DEAD-box ATP-dependent RNA helicase 56-like 34 252 - -
Trre5g05207 490 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 262 423 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05207 Trre-Chr5 53190328 53195974 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05207 22 427 Eukaryotic Initiation Factors Gene Family AT5G11200 82.103 0.0 747
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05207 K12812 - gmx:100808957 807.364