Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05203 ATGGTACAACAAACAAAGAAGTTCAGAGGAGTCAGGCAACGCCAGTGGGGCTCTTGGGTGTCAGAAATTCGCCACCCTTTGTTAAAAAGAAGGGTGTGGCTAGGGACATTTGAGACAGCAGAAGCAGCAGCAAGAGCATATGATCAAGCTGCAATATTGATGAATGGTCAAAGTGCTAAGACTAATTTTCCAAAGAAACAAGGTGAAGATGTTACTGCTATTGACACCCCTAATAATAATGGTGATGATTCTTTCTTGTCTCCCAAGGCACTTTCTGAGTTACTTAGTACTAAGCTTAGAAAGTATTGTAAAGACCCTTCTCCTTCACTTACTTGTTTGAGGTTAGATAATGATAATTCTCACATTGGAGTTTGGCAAAAAAGAGCTGGAACACATTCTGATTCTAATTGGGTCATGAGAGTTGAACTTGGTGGGAAGAAAAAGACTGTTGAATCAGAGATAGGGTCAAAAGAAGATATTATTGATGGTGGTAATAATAATAATGGTAATGTTGATGATATTGAAAATAGGGTAGTAGTAGAAGAAGAGGAAAGAGTTGCTTTGCAGATGATTGAAGAGTTACTTAATTGGAACTATCCATGTGGTTCAACTTCAAGTAATTAA 624 0.3782 MVQQTKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAAILMNGQSAKTNFPKKQGEDVTAIDTPNNNGDDSFLSPKALSELLSTKLRKYCKDPSPSLTCLRLDNDNSHIGVWQKRAGTHSDSNWVMRVELGGKKKTVESEIGSKEDIIDGGNNNNGNVDDIENRVVVEEEERVALQMIEELLNWNYPCGSTSSN 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05203 207 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Trre5g05203 207 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Trre5g05203 207 CDD AP2 6 64 IPR001471 GO:0003700|GO:0006355
Trre5g05203 207 Gene3D AP2/ERF domain 6 66 IPR036955 GO:0003700|GO:0006355
Trre5g05203 207 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Trre5g05203 207 FunFam Ethylene-responsive transcription factor 2 6 65 - -
Trre5g05203 207 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Trre5g05203 207 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Trre5g05203 207 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 147 - -
Trre5g05203 207 SUPERFAMILY DNA-binding domain 7 65 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05203 Trre-Chr5 53173201 53173922 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05203 4 200 AP2-EREBP Transcription Factor Family AT5G25390 59.406 4.59e-76 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre5g05203 AP2 1.8e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05203 - - lang:109326202 273.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05203 5 53173201 53173922 Trre5g05203 5 53173201 53173922 ECH
Trre15g04501 15 55660524 55661888 Trre5g05203 5 53173201 53173922 ECH