Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05202 ATGCCTCAGCTGCTACATGGGACACTTAAGGTAACCATAAGTGAAGTTGATAGATTGCAAGCTGGATGTAATTTGGATTTCTGTAGAAAGGGCACAACAAACAAGGGAAAGAGATTTCTAGCCCAAGTCAAAGGTTGTCTGTTGTGCAGGCCTGAGATTGTTGGGACAAGACTCTATGCAACAGTTGATTTAGATAAAGCAAGAGTTGGACGAACCAGAATGATAGGGAACCAACCCTCAAACCCGAAATGGAATGAGACATTTGAAATCTATTGCGCTCATTACATATCACATATTGTATTCACTGTCAAAGATGATAATCCAATTGGAGCAACTCTAATTGGAAGAGCTTATATCCCTGCCGAGAAAATTCTCAAGGGGCCTATAATTAACAGATGGGTTGAGATATTAGACGAAGAAGATCATCGTCCTGTACCAGGTGGTTCTAAAATTCGTGTTAGCATGCAATACTCTAGTGTCATTGAGGACAGAATATGTTTATGGTCTCAGGGAATACATATGCCATATTTAGGAGTTTCGCGTACATTTTTTGACCAGAGACAAGGTTGTAGTGTTACTTTATATCAAGATGCTCATGTTCCAGATAGTGTTCATCCGTGGATTCCAATATCGGGAACAAAATATTATGTTCCTGGAAGATGTTGGGAAGATATTTACAATGCAATTATGGATGCTAAACTCTTTATTTACATAACTGGTTGGTCTGTTCATACTGAAATAACCTTGATTAGGGACCCAAACAAGCCAACAGAAACTAGCATCACCCTTGGAGAAATGCTCAAGAGAAAAGCCAATGAAGGTGTTAATGTTCTTATGCTTGTTTGGGATGACAGAACTTCTGTTCCGGCTTTTAAGAAAGACGGTTTGATGGGAACACATGATCAAGAAACTGCTGAGTATTTTAAAAACACAAAAGTACATTGTGTTTTATGTCCGCGTAACCCTGATGGTAGAAAAAGTATAGTTCAAGGTTTTGAAATTTCAACTATGTTCACTCATCACCAAAAGACTATAGTTGTTGATGGCCATCATGTTGAAGGATCGCAGAAGCGAACCCTTATCAGTTTCGTAGGTGGTATTGATCTGTGTGATGGGAGATATGATACCATGGAACATCCTTTGTTTTCAACATTGAATACAATCCATCATGATGATTTTCATCAACCAAATTTCCCAGGTGCTTCTATTAAGAAAGGTGGACCTAGAGAACCGTGGCATGATATTCACTGCAAGCTAGAAGGACCTATTGCATGGGATGTGTTGTACAATTTTGAGCAGAGGTGGGAAAAGCAAGTTGGGAAGCAATTCTTATTCCCAATTGATTATCTTGACAGAATTCTAATCCACCCTTCTGATGCAATGATATCAGAAGAAGATGCAGACACTTGGAGTGTTCAATTGTTTAGGTCGATTGATGGTGGCGCTGTTTCAAACTTCCCTCAATCACCGGATGAAGTTATTGAATTAGGCCTTGTTAGTGGGAAAGATAACATCATTGATAGAAGTATTCAAGATGGTTATATAAATGCTATTCGACGAGCGAAAAACTTCATCTACATTGAAAATCAGTATTTCCTAGGGAGCTCATATGGTTGGCATGCAAGTGATATTAAAGTCGAAGACATCGGTGCTTTGCATCTCATACCAAAGGAGTTGTCATTGAAGATTGTTAGCAAAATTGAAGCCGGAGAAAGGTTTGTTGTGTATGTAGTGATTCCAATGTGGCCAGAAGGTATACCTGAAAGTGCCTCAGTTCAAGCAATATTAGATTGGCAAACAAGGACAATGGAGATGATGTATTCTGATATTGCTGATGCTATAAAAAATAAGAACATCGAAGCACATCCTCGCGATTATTTGACATTTTATTGCCTCGGCAAAAGGGAAAGTAAGAAAGATGGAGAGTATACTCCTCCAGAGGAACCGGCGCCTAACACTGACTATCATAGAGCACAAAAGTCTAGGAGGTTCATGATCTATGTTCATTCCAAGATGATGATAGTGGATGATGAATACATAATGATTGGTTCAGCAAACATAAACCAAAGATCAATGGATGGTGGAAGAGACACAGAGATTGCAATGGGTGCATTCCAACCTCATCATCTAACATCTACATCCAATGACTCACAAAGACCACAAGGTCAGATTTATGGATTCAGAAGAGCATTATGGTATGAACATATTGGTGATAACAGTGATGATTTCGACGAGCCTGAAAGTGTGGAATGTGTGAAACTTGTGAATCGTGTTGCTGAGAGGAATTGGAAATTATACTGTGATGATACATTAGATGAAAGTGTAAATACTCACCTTTTAAGGTATCCTGTCGAAGTTGGTGAAGATGGAAGTGTAACATCACTTCTTGGGATGCAATATTTTCCGGATACAACGGCTTTGATTCTTGGTTCAAAATCTGATTACCTTCCTCCCATACTTACCACCTAG 2469 0.3904 MPQLLHGTLKVTISEVDRLQAGCNLDFCRKGTTNKGKRFLAQVKGCLLCRPEIVGTRLYATVDLDKARVGRTRMIGNQPSNPKWNETFEIYCAHYISHIVFTVKDDNPIGATLIGRAYIPAEKILKGPIINRWVEILDEEDHRPVPGGSKIRVSMQYSSVIEDRICLWSQGIHMPYLGVSRTFFDQRQGCSVTLYQDAHVPDSVHPWIPISGTKYYVPGRCWEDIYNAIMDAKLFIYITGWSVHTEITLIRDPNKPTETSITLGEMLKRKANEGVNVLMLVWDDRTSVPAFKKDGLMGTHDQETAEYFKNTKVHCVLCPRNPDGRKSIVQGFEISTMFTHHQKTIVVDGHHVEGSQKRTLISFVGGIDLCDGRYDTMEHPLFSTLNTIHHDDFHQPNFPGASIKKGGPREPWHDIHCKLEGPIAWDVLYNFEQRWEKQVGKQFLFPIDYLDRILIHPSDAMISEEDADTWSVQLFRSIDGGAVSNFPQSPDEVIELGLVSGKDNIIDRSIQDGYINAIRRAKNFIYIENQYFLGSSYGWHASDIKVEDIGALHLIPKELSLKIVSKIEAGERFVVYVVIPMWPEGIPESASVQAILDWQTRTMEMMYSDIADAIKNKNIEAHPRDYLTFYCLGKRESKKDGEYTPPEEPAPNTDYHRAQKSRRFMIYVHSKMMIVDDEYIMIGSANINQRSMDGGRDTEIAMGAFQPHHLTSTSNDSQRPQGQIYGFRRALWYEHIGDNSDDFDEPESVECVKLVNRVAERNWKLYCDDTLDESVNTHLLRYPVEVGEDGSVTSLLGMQYFPDTTALILGSKSDYLPPILTT 822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05202 822 ProSiteProfiles C2 domain profile. 1 134 IPR000008 -
Trre5g05202 822 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 4 158 IPR035892 -
Trre5g05202 822 SMART C2_3c 8 133 IPR000008 -
Trre5g05202 822 SUPERFAMILY Phospholipase D/nuclease 180 450 - -
Trre5g05202 822 SMART pld_4 664 691 IPR001736 GO:0003824
Trre5g05202 822 SMART pld_4 336 373 IPR001736 GO:0003824
Trre5g05202 822 PANTHER PHOSPHOLIPASE D 4 810 IPR015679 -
Trre5g05202 822 Pfam C2 domain 8 135 IPR000008 -
Trre5g05202 822 CDD C2_plant_PLD 1 157 - -
Trre5g05202 822 SUPERFAMILY Phospholipase D/nuclease 510 750 - -
Trre5g05202 822 Gene3D Endonuclease Chain A 482 718 - -
Trre5g05202 822 PIRSF PLD_plant 1 822 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Trre5g05202 822 Gene3D Endonuclease Chain A 210 446 - -
Trre5g05202 822 Pfam Phospholipase D Active site motif 665 691 IPR001736 GO:0003824
Trre5g05202 822 Pfam Phospholipase D Active site motif 336 373 IPR001736 GO:0003824
Trre5g05202 822 Pfam Phospholipase D C terminal 741 812 IPR024632 -
Trre5g05202 822 Gene3D C2 domain 3 158 IPR035892 -
Trre5g05202 822 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 336 373 IPR001736 GO:0003824
Trre5g05202 822 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 664 691 IPR001736 GO:0003824
Trre5g05202 822 FunFam Phospholipase D 477 710 - -
Trre5g05202 822 FunFam Phospholipase D delta 212 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05202 Trre-Chr5 53164171 53167836 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05202 3 822 Phospholipase D Gene Family (Wang group) AT3G15730 62.847 0.0 1060
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05202 K01115 - gmx:100794115 1238.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05202 5 53164171 53167836 Trre5g05202 5 53164171 53167836 ECH
Trre5g05200 5 53148222 53151822 Trre5g05202 5 53164171 53167836 ECH