Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05200 ATGGCGCAGTTGCTACACGGGAGGCTCGATGTGACTATATATGAGGTCGATACACTACAAACTCAAACTCTTCCTGGATGCGATTTCAATCTCTGCAACAAGGGAACATGTACAAGTGCGGGGAAGAAAATTCTGTCACAGCTCAAGAATTGTTTTATGTGTCAATGCCAGCCCGCCGAGATTATTGGGATGGGTCTCTATGCGACGGTTGATTTAGACAAGGCGCGAGTTGGAAGAACTAGAATGATAGATAACCCGAAATGGAATGAAAACTTTCACATTTATACTGCTCATTCAATCTCCAATATCATATTCACTGTCAAACAAGATAATCCCATTGGAGCAACACTAATTGGAAGAGCTTATGTTCCAGTTGAACAAGTCATAAATGGTAACATAGTAAACACATGGATTCAAATATTAGATGTGAATCATCGTCCAATACAAGGTGGTTCCAAAATCCATGTTCAAATACAATTCTCACATGTTAAAAATGATCCAAACTGGTCACAAGGACTAAAGAGTCCACAATTTCAAGGAGTTCCTCACACTTTCTTTAAACAAAGTAATGGTTGTCAAATCACTCTTTACCAAGATGCACATGTTATAGATGGTTCTATTCCGTTTATTCCGTTGGACGGAGCAGAACGTTACGTGCCAGGAAAATGTTGGGAAGATATTTACAGTGCAATTAATGATGCTAAGCATTTTATTTGCATAACTGGTTGGTCTGTTTATACTGAAATAACCTTGATTAGGGACATAAACAAGTCAACAAGAACAAGCATCACACTTGGAGAGCTTCTCAAGAAGAAAGCAAATGAAGGTGTTAATGTTCTTATGCTTGTTTGGGATGACAGAACTTCTGTTCCTGATTTTAAGAAAGATGGTTTGATGGAAACTCATGATCAAGAAACTGGAGAGTATTTTAGAAATACAAATGTTCATTGCGTTTTGTGTCCGCGTAATCCTGGTCATGGAAGAAGCATAGTTCAAGGTTTTGAAATTTCAACCATGTTTACTCATCATCAAAAGACTATAATTGTTGACAGTAGAATTGTTGGTTCTGGACAATGGAATAAGCGATCAATCACAAGTTTTGTTGGTGGGATTGATTTGTGTGATGGAAGATATGATACCATGGAACATCCTTTGTTTTCAACTTTGAATACTGTCCATCATGATGATTTTCATCAACCAAACTTCCCAGGTGCTTCTATTAAGAAAGGTGGTCCTAGAGAGCCATGGCATGACATTCATTGTAAGCTAGAAGGACCAGTTGCATGGGATGTGTTATGCAATTTTGAGCAAAGGTGGGAGAAGCAAGTTGGTAATAAGAATGTTCCACTCCCTTCAAGCATTCTTAATGAATATAATATTGCTCGTGTACCGAATGTTGCGACGACAGATGAAAACAACAGATGGAATGTTCAGTTGTTTAGATCGATCGATGGTGGTGCTGCTTCAGGTTTCCCTCAAGATCCAAGAGAAGCTTGTGAAAAAGGTCTTGTTAGTGGAAAGGATAACATCATTGATAGAAGCATTCAAGACGCCTACATAAACGCTATTCGACGAGCAAAAAACTTCATCTACATAGAAAATCAGTATTTTCTTGGAAGTTCATATGGTTGGAAATCATCTGATATTAAAGTTGAGGACATTGGTGCTTTACATCTTATACCAAAGGAACTTTCATTGAAGATTGTTAGCAAGATTGAAGCTGGAGAGAGATTTTCGGTGTACATTGTCATTCCAATGTGGCCAGAAGGTATACCTGAAAGTGGTTCAGTTCAAGCTATATTAGATTGGCAAAGAAGGACAATGGAGATGATGTATTCTGATATTGCTGAAGCTCTTCAAAGAAAAGGAATCAGAGCCAACCTAAGAGATTACTTGACATTCTTTTGCCTTGGAAATAGAGAAAGCAAGAAAAATAATGAATATACTCCTACTGAAAAACCAGAACCTGACAGTGACTATAGTAGAGCACAAAATTCTAGAAGATTCATGATATATGTTCATGCCAAAATGATGATAGTTGATGATGAATACATAATCATTGGTTCTGCAAACATAAACCAAAGATCAATGGATGGAGCTAGAGACAGTGAGATTGCAATAGGTGCATTCCAACCACATCATATAGCATCTAATAATAGGACACCAAAAGGACAAATATATGCATTTAGACGTTCATTATGGTATGAACACCTTGGAGATATTGGTGATACAAGCCACTTTGATAATCCAGAAAGTTTGAATTGCATCAAACTTGTGAACCGTTTTGCTGAGACCAATTGGGACATATACTCAAAGGATACATTTGAGGAATACAAATATTCATTTCATCACCTCATGAGATATCCAATAGAAGTAACCAATAATGGAGCCATAACAACTCTTCCTGGATTTGAATGTTTTCCTGATACTAAGGCTAGGATTTTGGGTTCAAAATCTGATTACCTTCCTCCAATTCTTACCACCTAA 2487 0.3743 MAQLLHGRLDVTIYEVDTLQTQTLPGCDFNLCNKGTCTSAGKKILSQLKNCFMCQCQPAEIIGMGLYATVDLDKARVGRTRMIDNPKWNENFHIYTAHSISNIIFTVKQDNPIGATLIGRAYVPVEQVINGNIVNTWIQILDVNHRPIQGGSKIHVQIQFSHVKNDPNWSQGLKSPQFQGVPHTFFKQSNGCQITLYQDAHVIDGSIPFIPLDGAERYVPGKCWEDIYSAINDAKHFICITGWSVYTEITLIRDINKSTRTSITLGELLKKKANEGVNVLMLVWDDRTSVPDFKKDGLMETHDQETGEYFRNTNVHCVLCPRNPGHGRSIVQGFEISTMFTHHQKTIIVDSRIVGSGQWNKRSITSFVGGIDLCDGRYDTMEHPLFSTLNTVHHDDFHQPNFPGASIKKGGPREPWHDIHCKLEGPVAWDVLCNFEQRWEKQVGNKNVPLPSSILNEYNIARVPNVATTDENNRWNVQLFRSIDGGAASGFPQDPREACEKGLVSGKDNIIDRSIQDAYINAIRRAKNFIYIENQYFLGSSYGWKSSDIKVEDIGALHLIPKELSLKIVSKIEAGERFSVYIVIPMWPEGIPESGSVQAILDWQRRTMEMMYSDIAEALQRKGIRANLRDYLTFFCLGNRESKKNNEYTPTEKPEPDSDYSRAQNSRRFMIYVHAKMMIVDDEYIIIGSANINQRSMDGARDSEIAIGAFQPHHIASNNRTPKGQIYAFRRSLWYEHLGDIGDTSHFDNPESLNCIKLVNRFAETNWDIYSKDTFEEYKYSFHHLMRYPIEVTNNGAITTLPGFECFPDTKARILGSKSDYLPPILTT 828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05200 828 FunFam Phospholipase D 482 715 - -
Trre5g05200 828 Pfam C2 domain 8 139 IPR000008 -
Trre5g05200 828 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 338 377 IPR001736 GO:0003824
Trre5g05200 828 PIRSF PLD_plant 1 828 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Trre5g05200 828 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 63 162 IPR035892 -
Trre5g05200 828 PANTHER PHOSPHOLIPASE D 4 817 IPR015679 -
Trre5g05200 828 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 669 696 IPR001736 GO:0003824
Trre5g05200 828 SUPERFAMILY Phospholipase D/nuclease 166 449 - -
Trre5g05200 828 SUPERFAMILY Phospholipase D/nuclease 503 738 - -
Trre5g05200 828 Gene3D Endonuclease Chain A 214 473 - -
Trre5g05200 828 FunFam Phospholipase D delta 214 455 - -
Trre5g05200 828 Gene3D C2 domain 3 163 IPR035892 -
Trre5g05200 828 CDD C2_plant_PLD 4 160 - -
Trre5g05200 828 Pfam Phospholipase D C terminal 746 818 IPR024632 -
Trre5g05200 828 Gene3D Endonuclease Chain A 481 717 - -
Trre5g05200 828 Pfam Phospholipase D Active site motif 338 377 IPR001736 GO:0003824
Trre5g05200 828 Pfam Phospholipase D Active site motif 670 696 IPR001736 GO:0003824
Trre5g05200 828 SMART pld_4 669 696 IPR001736 GO:0003824
Trre5g05200 828 SMART pld_4 338 377 IPR001736 GO:0003824
Trre5g05200 828 ProSiteProfiles C2 domain profile. 1 138 IPR000008 -
Trre5g05200 828 SMART C2_3c 8 137 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05200 Trre-Chr5 53148222 53151822 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05200 1 828 Phospholipase D Gene Family (Wang group) AT3G15730 63.766 0.0 1079
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05200 K01115 - gmx:100791688 1300.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05200 5 53148222 53151822 Trre7g00217 7 1495196 1498612 ECH
Trre5g05200 5 53148222 53151822 Trre11g04867 11 59631553 59636230 ECH
Trre5g05200 5 53148222 53151822 Trre5g05202 5 53164171 53167836 ECH
Trre5g05200 5 53148222 53151822 Trre5g05200 5 53148222 53151822 ECH