Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05193 ATGGTTGTAACAAAACATCTTCTTCTTCTTCTCTTCATTTTCATCTTCCTCATGTCAAAACCATGTTTCTCTGGTACTCAATATATTGGCCAAATCTTACCTGGTACTCAAGGTTCACAAATGGATTGGATTGACAGAGAAGGAAAATTCCTCCTCTCAAAAAACCAAAATTTTGCTTTCGGTTTTACCACCACCGCCAACGACACCACCAAGTTTCTATTAGTAATTCTTCATGTACCAAGCTCCACAGTGATTTGGACAGCTAATAGAGCAAAACCTGTTTCTAATTCTGATGATTTTGTCTTTGATAAAAAGGGTAATGTTTTTTTACAAAAAGGTGGAGTTTTGATTTGGTCTACAAACACAGTTAACAAAGGGGTTTCTTCAATGGTGTTGCAGGATAATGGAAATTTGGTTTTGCTTGGGAAGGATAACAGTACGGTAATTTGGCAGAGTTTTGATTTTCCAACTGATACTTTGTTGTCTGAACAGGTTTTCAAAGAGGGAATGAAACTTACTAGTGAACCTAGTTCAAATAATTTGACCTATGTTCTTGAGATTAAATCTGGTAATGTTGTTCTTTCAGCTGCTTTCAAAATTCCACAAGTTTATTGGTCTATGCAGAATGATAACCGTAAAATCATTGATAAGGTTGGTGATGTTGTGGTTTCGTCGAATCTAACTGATAATTCTTGGAGATTTTATAATGAGAAAAAATCTTTGTTGTGGCAATTCATTTTCTCTGATCATGAAGGTGTCAATGTAACTTGGATTGCTGTTTTGGGAAGGGATGGTGTTATTACTTTCTCTAGTCTTAACAGTGGTGGATCCGTCGCTGATTCTTCGACAAGGATACCGCAAGATCCTTGTGGTACACCGCAGCCTTGTGATCCTTACAATATATGCACAGGCAACCGTAGGTGTAGTTGTCCTTCCGTTGTTCCTAGTTGTAAACCTGGTTTTGTTTCTGCTTGTGACGAAAAATCAGAAAAGTCTATTGAATTTCTGAAAGGTGATGACGGGCTAGATTACTTTGCACTCGATTTTCTTCAGCCCTTTTCGAAAACCAATTTGGTAGGTTGCCAAACATCGTGCCGCGCAAATTGCTCTTGTCTTGCAATGTTCTTTCATACAAGTTCAGGAAACTGTTTCCTGTTGGAAAGTGTAGGAAGTTTTCAGAAATCTGATGACGGTGATTCTGGTTATGTTTCTTACATTAAGATCTCAAGCAATGGAAACTCAAAAGGAAGTGGAAGCAGCAATAAACACATCATTGTTGTTGTTGTAATTGTCATATTAACTTTGTTTGTAATTTCTCTTATGCTCTTTGTTGGGGTTAGATACTACAGGAAAAAGAAAAGGTTGCCGGAGTCACCTAGAGAATCAGAAGAGGACAATTTCTTGGAGAATTTATCCGGTATGCCGATCCGTTACCGATACAAAGATCTCGAAGTTGCAACAAATAACTTCTCAGAAAAGCTTGGCTCAGGAGGTTTTGGTTCAGTTTACAAAGGTGCCCTACCTGATGGAACTCAATTAGCTGTGAAGCAGCTAGAAGGTATTGGTCAAGGGAAGAAAGAGTTCAGAGCTGAAGTTAGCATCATTGGAAGCATTCATCACCTTAATTTGGTAAGGCTCAAAGGTTTTTGTGCTGATGGAACACACAGGCTTCTAGTTTATGAGTTTATGGCTAATAACTCATTGGATAAATGGATATTCAAGAAGAAAAAAGGTGAATTTCTTTTGGATTGGGATACAAGGTTTAACATAGCAGTAGGAACAGCAAAAGGGCTAGCTTATTTACATGAAGATTGTGACTCAAAGATCGTTCATTGTGACATCAAGCCTGAAAATGTACTTCTGGATGATCATTTCACTGCCAAAGTTTCCGATTTTGGTTTAGCTAAACTCATGAATAGAGAACAAAGTCATGTTTTTACAACAATGAGAGGAACACGCGGCTACCTTGCACCTGAATGGATAACAAACTACGCTATATCAGAGAAAAGTGATGTATACAGCTACGGAATGGTGTTGCTAGAGATTATCGGAGGAAGGAAGAATTATGACACTAACGAGAGTTCAGAGAAAAGCTATTTTCCTAGTTTCGCTTTTAAGATGATGGAAGAAGGGAAAATGAGAGATATACTTGATTCTGAGCTGAAAATTGACGAGCATGATGATAGAGCTCAATGTGCTATAAGGGTAGCATTGTGGTGCATACAAGAAGACATGTCAATGAGACCTTCCATGACTAAAGTTGTTCAAATGTTGGAAGGTCTTTGTAATGTTCCTATACCACCAACTAGTTCATATTTGGGTTCTAGGCTTTATGCTACTGCTTTCAAATCATCTAGTGAAGGTGGTAACTCTTCTGCTCCATCAGATGGTAATAGTAATAGTAATAGTGATGCTTATCTATCAGCAGTTCGTCTTTCTGGCCCAAGATAA 2451 0.3803 MVVTKHLLLLLFIFIFLMSKPCFSGTQYIGQILPGTQGSQMDWIDREGKFLLSKNQNFAFGFTTTANDTTKFLLVILHVPSSTVIWTANRAKPVSNSDDFVFDKKGNVFLQKGGVLIWSTNTVNKGVSSMVLQDNGNLVLLGKDNSTVIWQSFDFPTDTLLSEQVFKEGMKLTSEPSSNNLTYVLEIKSGNVVLSAAFKIPQVYWSMQNDNRKIIDKVGDVVVSSNLTDNSWRFYNEKKSLLWQFIFSDHEGVNVTWIAVLGRDGVITFSSLNSGGSVADSSTRIPQDPCGTPQPCDPYNICTGNRRCSCPSVVPSCKPGFVSACDEKSEKSIEFLKGDDGLDYFALDFLQPFSKTNLVGCQTSCRANCSCLAMFFHTSSGNCFLLESVGSFQKSDDGDSGYVSYIKISSNGNSKGSGSSNKHIIVVVVIVILTLFVISLMLFVGVRYYRKKKRLPESPRESEEDNFLENLSGMPIRYRYKDLEVATNNFSEKLGSGGFGSVYKGALPDGTQLAVKQLEGIGQGKKEFRAEVSIIGSIHHLNLVRLKGFCADGTHRLLVYEFMANNSLDKWIFKKKKGEFLLDWDTRFNIAVGTAKGLAYLHEDCDSKIVHCDIKPENVLLDDHFTAKVSDFGLAKLMNREQSHVFTTMRGTRGYLAPEWITNYAISEKSDVYSYGMVLLEIIGGRKNYDTNESSEKSYFPSFAFKMMEEGKMRDILDSELKIDEHDDRAQCAIRVALWCIQEDMSMRPSMTKVVQMLEGLCNVPIPPTSSYLGSRLYATAFKSSSEGGNSSAPSDGNSNSNSDAYLSAVRLSGPR 816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05193 816 ProSitePatterns Serine/Threonine protein kinases active-site signature. 609 621 IPR008271 GO:0004672|GO:0006468
Trre5g05193 816 ProSitePatterns Protein kinases ATP-binding region signature. 494 516 IPR017441 GO:0005524
Trre5g05193 816 Gene3D Phosphorylase Kinase; domain 1 453 562 - -
Trre5g05193 816 SMART serkin_6 488 758 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g05193 816 SUPERFAMILY Protein kinase-like (PK-like) 469 759 IPR011009 -
Trre5g05193 816 Pfam Protein kinase domain 491 756 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g05193 816 PIRSF SRK 1 811 IPR024171 GO:0004674
Trre5g05193 816 MobiDBLite consensus disorder prediction 783 808 - -
Trre5g05193 816 FunFam Serine/threonine-protein kinase 38 154 - -
Trre5g05193 816 ProSiteProfiles Bulb-type lectin domain profile. 36 153 IPR001480 -
Trre5g05193 816 ProSiteProfiles Protein kinase domain profile. 488 761 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g05193 816 SMART blect_4 42 156 IPR001480 -
Trre5g05193 816 FunFam S-receptor-like kinase 5 563 767 - -
Trre5g05193 816 SUPERFAMILY alpha-D-mannose-specific plant lectins 80 208 IPR036426 -
Trre5g05193 816 Pfam D-mannose binding lectin 83 166 IPR001480 -
Trre5g05193 816 MobiDBLite consensus disorder prediction 783 816 - -
Trre5g05193 816 Gene3D - 44 154 IPR036426 -
Trre5g05193 816 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 42 769 - -
Trre5g05193 816 FunFam serine/threonine-protein kinase PBS1-like 457 562 - -
Trre5g05193 816 CDD STKc_IRAK 494 761 - -
Trre5g05193 816 CDD B_lectin 48 156 IPR001480 -
Trre5g05193 816 Gene3D Transferase(Phosphotransferase) domain 1 563 765 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05193 Trre-Chr5 53104316 53106766 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05193 436 770 Receptor kinase-like Gene Family AT5G20050 45.658 1.94e-96 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Trre5g05193 Pkinase 2.7e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05193 - - tpra:123882999 1360.9