Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05179 ATGGACCTTCAATTAGGCCTGGCTCTACCAATTCATAGTTCCATTGATGGATTTAATCATAGTGGGAGTGGTTGTTTTGAAAACAAAAAGTATGGCAAAAACAAGCGTAGCTTTGAAGAGTCTTTTGGACATTTTTTGAAACCATTGCCTTTATTAGTATGGAGTGGACAACCAAATGAAGAAGATGATCGCAATAAAAAGATGAAAACAAACATTCACACATCAAATAATGAAGGAGAAAATTATCATTTGGTGGGGTGGCCACCAATTAAATCATGGAGGAAGAAAGAACTTCATGATCAGCAACATCATGGCTATATAAGGATTAATCATAGGATGCAAGGTAATGAAAATCAAGGTAGACGATCAAAACCTTTATATGTTAAGGTTAACATGGAAGGGGTTGCCATAGGTAGACAAATCAATTTGAGGCTTTACAACTCTTATCATACTCTCAAAGACTCATTGATTACCATGTTTGTTCAATACCAAAATTTTGAGGAAGATGGAGTAAACTATACACTCACATTTCAGAATATACAAGGGGATTGGCTGCTTATCGGACACATACCATGGCAATCCTTTATTGGTACGGTGCGGCGTTTGGCTATATTGAGGAGTGGAAAATGA 630 0.3667 MDLQLGLALPIHSSIDGFNHSGSGCFENKKYGKNKRSFEESFGHFLKPLPLLVWSGQPNEEDDRNKKMKTNIHTSNNEGENYHLVGWPPIKSWRKKELHDQQHHGYIRINHRMQGNENQGRRSKPLYVKVNMEGVAIGRQINLRLYNSYHTLKDSLITMFVQYQNFEEDGVNYTLTFQNIQGDWLLIGHIPWQSFIGTVRRLAILRSGK 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05179 209 SUPERFAMILY CAD & PB1 domains 121 202 - -
Trre5g05179 209 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 4 207 IPR003311 GO:0005634|GO:0006355
Trre5g05179 209 Pfam AUX/IAA family 32 207 IPR033389 -
Trre5g05179 209 ProSiteProfiles PB1 domain profile. 125 209 IPR000270 GO:0005515
Trre5g05179 209 Gene3D - 120 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05179 Trre-Chr5 52998976 53000115 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05179 117 207 B3 DNA Binding Superfamily AT3G61830 34.783 8.65e-10 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Trre5g05179 AUX_IAA 6.1e-34 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05179 K14484 - gmx:100783359 280.796