Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05153 ATGTTCTCAGATTTGAATTTTTTGGCTGAAGGTGGATTTGGTGTGGTTCACAGAGGGATACTCAAAGATGGTCAGGTTGTTGCAGTGAAACAATTAAAATCTAGTGGCTCTCAAGCAGATCTTGATTTCTGCAGGGAAGTTCGGGTTTTGAGTTGTGCACAACACAGAAATATTGTATTGCTGATAGGATTTTGCACAGAGGACAATGTGAGGATATTAGTCTATGAGTACGTATGTAATGGATCCTTAAATATGCCTAAGAGCTACAATACAACATAA 279 0.3835 MFSDLNFLAEGGFGVVHRGILKDGQVVAVKQLKSSGSQADLDFCREVRVLSCAQHRNIVLLIGFCTEDNVRILVYEYVCNGSLNMPKSYNTT 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05153 92 ProSiteProfiles Protein kinase domain profile. 2 92 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g05153 92 SUPERFAMILY Protein kinase-like (PK-like) 2 84 IPR011009 -
Trre5g05153 92 Gene3D Phosphorylase Kinase; domain 1 1 77 - -
Trre5g05153 92 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 1 77 - -
Trre5g05153 92 PANTHER OS01G0750732 PROTEIN 2 83 - -
Trre5g05153 92 Pfam Protein tyrosine and serine/threonine kinase 7 84 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05153 Trre-Chr5 52821813 52822091 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05153 2 83 Trihelix Transcription Factor Family AT1G23540 51.220 8.55e-25 94.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Trre5g05153 PK_Tyr_Ser-Thr 2.7e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05153 - - var:108323674 159.844