Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05135 ATGGCTTATCACAACCAAGACCACCCACTCCATCATTTCACAGACCAACCACAACAACAACCAACCTCCGATCCTCACAACTCTTTCCAAACCGCACCTAATTGGCTTAACAACGCTCTTCTACGCAACCTCGAAACCAACGTCAACGCTACAACAACAACCACCACAACAAACAACAGTTCCAATTTCCTCAACCTTGAAACCGCCGGTTCTCAATCCTCCGGTCAATGGCTATCCCGTCCGATCCTTCACCGTAATCAAAGCGAAGTCATCGATAACATCGCTGGAGATAGTCTTAAGACGGCGGAAAGCGGCGAGACAGCGACGGAGGAAGGTGTTATGAACTGGCAGAAAGCGAAATACAAAGGTGAAATTATGGCTCATCCGCTTTACGAACAGCTTCTATCAGCACACGTGGCGTGTTTGAGAATCGCCACGCCTGTTGATCAGTTGCCGAGAATTGATGCTCAGCTGGCAGAGTCACAGAATGTTGTTGCCAAGTACTCTGCCTTTGGACAGGGCATGCTTGATGATGATAACAAACAACTCGACCATTTCATGTCGCACTATGTTTTGTTGCTTTGTTCGTTCAAAGAACAGCTTCAACAACATGTCCGGGTCCATGCAATGGAAGCAGTAATGGCTTGTTGGGAGATTGAACAGTCTTTACAAAGTCTAACAGGAGTTTCACCCGGGGAAGGTACGGGAGCAACAATGTCCGAGGACGAAGATGAGCAAGTAGACAGTGATGTTAATCTGTTTGATGGTGGTATGGATGGTTCTGATAATAGCATGGGAGGATTTGGTCCTCTTGTTCTAACAGAGAATGAGAGGTCCCTCATGGAACGTGTAAGACATGAATTAAAGCATGAATTGAAACAGGGTTATAAAGAGAAAATTGTGGACATAAGAGAGGAAATTTTACGCAAGAGACGAGCTGGAAAACTTCCCGGTGATACGACCTCAGTTCTTAAAGATTGGTGGCAATCACATTCAAAGTGGCCTTATCCAACAGAGGAGGATAAAGCAAGGTTGGTGCAAGAAACAGGTTTACAATTAAAACAGATAAATAATTGGTTTATCAATCAAAGGAAGAGAAACTGGCACAGTAATCCTTCAACTTCTAATGTCTTGAAGAGCAAGCGCAAGAGGTATCTATCTAATTATTTTTTTCCTAATTAA 1182 0.4399 MAYHNQDHPLHHFTDQPQQQPTSDPHNSFQTAPNWLNNALLRNLETNVNATTTTTTTNNSSNFLNLETAGSQSSGQWLSRPILHRNQSEVIDNIAGDSLKTAESGETATEEGVMNWQKAKYKGEIMAHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAESQNVVAKYSAFGQGMLDDDNKQLDHFMSHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSEDEDEQVDSDVNLFDGGMDGSDNSMGGFGPLVLTENERSLMERVRHELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKDWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTSNVLKSKRKRYLSNYFFPN 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05135 393 SMART KNOX2_2 172 228 IPR005541 GO:0003677|GO:0005634
Trre5g05135 393 Pfam ELK domain 287 308 IPR005539 GO:0003677
Trre5g05135 393 SMART ELK_2 287 308 IPR005539 GO:0003677
Trre5g05135 393 CDD homeodomain 310 371 IPR001356 GO:0003677
Trre5g05135 393 SMART HOX_1 309 374 IPR001356 GO:0003677
Trre5g05135 393 ProSiteProfiles ELK domain profile. 287 307 IPR005539 GO:0003677
Trre5g05135 393 SUPERFAMILY Homeodomain-like 309 373 IPR009057 -
Trre5g05135 393 ProSiteProfiles 'Homeobox' domain profile. 307 370 IPR001356 GO:0003677
Trre5g05135 393 SMART KNOX1_2 119 163 IPR005540 GO:0003677|GO:0005634
Trre5g05135 393 Pfam KNOX2 domain 179 227 IPR005541 GO:0003677|GO:0005634
Trre5g05135 393 MobiDBLite consensus disorder prediction 1 31 - -
Trre5g05135 393 Gene3D - 308 369 - -
Trre5g05135 393 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 84 371 - -
Trre5g05135 393 FunFam homeobox protein knotted-1-like 3 isoform X1 308 369 - -
Trre5g05135 393 Pfam KNOX1 domain 121 162 IPR005540 GO:0003677|GO:0005634
Trre5g05135 393 Pfam Homeobox KN domain 327 366 IPR008422 GO:0003677|GO:0006355
Trre5g05135 393 MobiDBLite consensus disorder prediction 12 31 - -
Trre5g05135 393 MobiDBLite consensus disorder prediction 227 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05135 Trre-Chr5 52743355 52746038 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05135 1 384 Homeobox Transcription Factor Family AT5G25220 64.155 0.0 509
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Trre5g05135 KNOX2 6.6e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05135 - - pvu:PHAVU_009G090500g 580.482