Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05132 ATGAATCTTCTTCTTATGCTTTTCATGGCGCTTCTTCTTCTTCTTATATTGAGTTTCATATGTATATGGATTTACCATAACAATTCATCAAAATCTAAAAGAAAAAATGTTCTAAACATAGATGCAGAGAAAGGAAACACATCAACACAAATTTTGAGTAAATTCAGTTCCATTGAGTTGGTTGGTATGAAGAAAGGAATTGTTCCAATAATTGATTACAAACAAATAGAAAAATCAACCAATAATTTTGAGGAAAATAACATCTTGGGTGTTGGTGGTTTTGGTTGTGTTTACAAGGCACAATTTGATGAAAATTTGGTTGTTGCTGTCAAGAAACTACATTGTCAAACTCAATATGCTGAGACAGAATTTGAGAATGAGTTGGAATTGTTAAGTAAAATTCAACATCCAAATATAATTTCTTTATTGGGATGTAGCATTAATGGAGAAATGAGGTTTATTGTGTATGAGTTAATGCAAAATGGATCCTTAGAAGCTCAATTACATGGACCATCTCAAGGCTCAAGATTGACTTGGTATATGAGAATGAAGATTGCTCTTGACACTGCAAGAGGACTAGAATATCTACATGAGCATTGTTACCCTCCAGTGATTCATAGAGATATGAAATCTTCCAACATTCTTTTAGATGCAAACTTCAATGCCAAGCTCTCTGATTTTGGTCTAGCTATAATTGATGGGTCCCAAAAGAAGAACATCAAGCTTTCAGGAACATTGGGGTACGTAGCCCCAGAATATATTTTAGATGGGAAATTGACTGATAAAAGTGATGTGTATGCTTATGGGGTTGTACTCCTGGAGCTCCTGTTGGGGAGGATGCCTGTGGAAAAACTGGCACAAGCTAAGTGCCAATCCCTTGTCACATGGGCCATGCCTCAGCTCACAGACAGATCTAAACTTCCAAACATTGTTGATCCAGTGATAAAGGATACAATGGATCTCAAACACTTATACCAGGTTGCTGCAGTAGCTGTGTTGTGTTTGCAACCAGAGCCAAGTTACCGCCCATTAATCACAGATGTTCTTCACTCACTTATTCCTCTTGTTCCTGTTGAGCTCGGAGGAACGCTCAGGGTGCCACGAGTTATTTCTCAAGACACTGCTTCTGTGAGTTATACCCAGTGA 1146 0.3761 MNLLLMLFMALLLLLILSFICIWIYHNNSSKSKRKNVLNIDAEKGNTSTQILSKFSSIELVGMKKGIVPIIDYKQIEKSTNNFEENNILGVGGFGCVYKAQFDENLVVAVKKLHCQTQYAETEFENELELLSKIQHPNIISLLGCSINGEMRFIVYELMQNGSLEAQLHGPSQGSRLTWYMRMKIALDTARGLEYLHEHCYPPVIHRDMKSSNILLDANFNAKLSDFGLAIIDGSQKKNIKLSGTLGYVAPEYILDGKLTDKSDVYAYGVVLLELLLGRMPVEKLAQAKCQSLVTWAMPQLTDRSKLPNIVDPVIKDTMDLKHLYQVAAVAVLCLQPEPSYRPLITDVLHSLIPLVPVELGGTLRVPRVISQDTASVSYTQ 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05132 381 PIRSF ILK 26 355 - -
Trre5g05132 381 ProSiteProfiles Protein kinase domain profile. 83 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g05132 381 PANTHER OS01G0750732 PROTEIN 14 356 - -
Trre5g05132 381 Pfam Protein kinase domain 83 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g05132 381 Gene3D Transferase(Phosphotransferase) domain 1 159 357 - -
Trre5g05132 381 FunFam Protein kinase superfamily protein 49 158 - -
Trre5g05132 381 ProSitePatterns Serine/Threonine protein kinases active-site signature. 204 216 IPR008271 GO:0004672|GO:0006468
Trre5g05132 381 FunFam probable receptor-like protein kinase At1g80640 159 357 - -
Trre5g05132 381 SMART serkin_6 83 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g05132 381 SUPERFAMILY Protein kinase-like (PK-like) 63 352 IPR011009 -
Trre5g05132 381 ProSitePatterns Protein kinases ATP-binding region signature. 89 112 IPR017441 GO:0005524
Trre5g05132 381 CDD STKc_IRAK 89 355 - -
Trre5g05132 381 Gene3D Phosphorylase Kinase; domain 1 43 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05132 Trre-Chr5 52695590 52698386 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05132 70 356 Receptor kinase-like Gene Family AT3G58690 49.492 6.61e-97 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-X Trre5g05132 Pkinase 4.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05132 - - gmx:100784795 578.17