Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05131 ATGGCCAGACCACAACAGCGATACCGAGGCGTCCGACAAAGGCATTGGGGCTCTTGGGTCTCTGAAATTCGCCACCCCATTTTAAAAACAAGAATTTGGCTTGGAACATTTGAAACAGCTGAAGATGCAGCAAAAGCATATGATGAAGCTGCAAGACTAATGTGTGGTGCAAGAGCAAGAACAAATTTCCCTTACAATCCAAATGTGTCTCAATCATCATCTTCTAAGCTTCTCTCAGCAACTTTAACTGCTAAACTTCATAGATGCTACATGGCTTCATTACAAATCACTAGACCAATTTCTCTGCAACAACCTCAAAGAGAATCTTCACAAAGTATCATAAACTCCACAAACAATGTTCCCATGAAAAACAGTGAAGAAGTTGACACTACAATGAGACATGAAGAGGTGAATGAATCAGAAGGAAATTGGGTTTTCAAGAAAGTTAAAGTTGAAAATTCTCAGCAATTTATTAAGCCTCTTGAAGAAGATCACAATCACATTGAACAAATGATTCAAGAATTGCTTCATTATGGGTCTATTGAACTTTGCTCTATTGATTCATGA 567 0.381 MARPQQRYRGVRQRHWGSWVSEIRHPILKTRIWLGTFETAEDAAKAYDEAARLMCGARARTNFPYNPNVSQSSSSKLLSATLTAKLHRCYMASLQITRPISLQQPQRESSQSIINSTNNVPMKNSEEVDTTMRHEEVNESEGNWVFKKVKVENSQQFIKPLEEDHNHIEQMIQELLHYGSIELCSIDS 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05131 188 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Trre5g05131 188 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 6 123 - -
Trre5g05131 188 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Trre5g05131 188 FunFam Ethylene-responsive transcription factor 2 6 65 - -
Trre5g05131 188 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677
Trre5g05131 188 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Trre5g05131 188 CDD AP2 6 66 IPR001471 GO:0003700|GO:0006355
Trre5g05131 188 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Trre5g05131 188 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Trre5g05131 188 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05131 Trre-Chr5 52678621 52679390 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05131 1 186 AP2-EREBP Transcription Factor Family AT5G25190 65.608 3.40e-77 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre5g05131 AP2 9e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05131 - - gmx:100804510 272.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05131 5 52678621 52679390 Trre5g05131 5 52678621 52679390 ECH