LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre5g05130	ATGGGTTCTGCTAAGTCGGCTGTTGATTTAATGGGATCTTCTTCTGAAGTTCATTTTTCTGGATTTCACATGGATGGTTTTGAGAAAAGAGAGGCTAGCACAGAACAACCAACAACATCGGCAACTGACATGTACAACCAACCTTTCATCATAGGTGTTGCTGGCGGTGCAGCATCTGGCAAAAAAACAGTTTGTGATATGATTGTTCAACAGCTTCATGACCAGCGAGTTGTGCTTGTTAATCAGGATTCTTTTTACAATAACTTGACTGAGGAAGAACGAGCAAGAGTACAAGATTACAACTTTGACCATCCTGATGCTTTTGATACTGAGGAATTGCTTCGTGTTATGGACAAGTTGAAGCATGGCGAAGCTGTAGATCTTCCAAAGTATGATTTTAAGAGTTACAAAAGTGAAGCGTTAAGACGGGTGAACCCTTCAGATGTTATAATTTTGGAAGGCATCCTTGTTTTTCATGATCCACGTGTTCGGGAGTTGATGAATATGAAGATATTTGTTGACACAGATGCTGATGTTCGTTTGGCAAGAAGGATTAGACGTGATACCAGCGAGAAGGATCGGGATATTGGAGCAATTCTTGATCAGTATTCAAAATTTGTGAAGCCAGCTTTTGATGATTTTATTCTTCCAACAAAAAAGTATGCCGATATAATCATACCTCGTGGAGGAGATAATCATGTAGCTGTTGATTTGATTGTTCAGCATATCCGCACAAAGCTTGGTCAGCATGACCTGTGTAAAATATATCCGAATTTATACGTCATTCAGTCAACTTTTCAGATACGGGGCATGCATACCCTTATACGTGATGCTCAGATAACGAAGCATGATTTTGTATTTTATGCTGATCGTTTGATTCGTTTGGTTGTAGAACATGGTTTGGGACATCTTCCATTTACCGAAAAGCAAGTAGTCACTCCCACCGGTTCTGTATACACCGGTGTGGATTTTTGTAAGAGGTTGTGTGGTGTCTCTGTCATCAGAAGTGGGGAGAGTATGGAAAATGCCTTAAGAGCATGCTGTAAAGGTATTAAGATTGGGAAAATTCTGATCCACAGAGAAGGTGACAATGGTCAACAGCTAATATATGAAAAGTTGCCAAATGATATCTCAGAAAGGCATGTGTTACTGTTGGACCCTATTCTCGGCACAGGTAACTCAGCTGTTCAAGCGATTTCTTTACTTATACAAAAGGGTGTACCAGAATCCAACATTATATTTCTTAATCTCATATCTGCTCCTAAAGGTGTTCATGTGGTCTGCAAAAGTTTCCCAAGAATTAAAATAGTGACATCTGAGATAGAGATTGGTTTGAACGAAGATTTCCGTGTCATACCAGGCATGGGCGAGTTTGGAGATCGGTACTTTGGAACCGACGATGATGAACAAGTGACGGTTATTTCACAGTAA	1431	0.4004	MGSAKSAVDLMGSSSEVHFSGFHMDGFEKREASTEQPTTSATDMYNQPFIIGVAGGAASGKKTVCDMIVQQLHDQRVVLVNQDSFYNNLTEEERARVQDYNFDHPDAFDTEELLRVMDKLKHGEAVDLPKYDFKSYKSEALRRVNPSDVIILEGILVFHDPRVRELMNMKIFVDTDADVRLARRIRRDTSEKDRDIGAILDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAVDLIVQHIRTKLGQHDLCKIYPNLYVIQSTFQIRGMHTLIRDAQITKHDFVFYADRLIRLVVEHGLGHLPFTEKQVVTPTGSVYTGVDFCKRLCGVSVIRSGESMENALRACCKGIKIGKILIHREGDNGQQLIYEKLPNDISERHVLLLDPILGTGNSAVQAISLLIQKGVPESNIIFLNLISAPKGVHVVCKSFPRIKIVTSEIEIGLNEDFRVIPGMGEFGDRYFGTDDDEQVTVISQ	476

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre5g05130	476	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	40	239	IPR027417	-
	Trre5g05130	476	FunFam	Uridine kinase	45	249	-	-
	Trre5g05130	476	NCBIfam	uridine kinase	47	246	IPR000764	-
	Trre5g05130	476	Gene3D	-	45	249	IPR027417	-
	Trre5g05130	476	SUPERFAMILY	PRTase-like	249	466	IPR029057	-
	Trre5g05130	476	PRINTS	Uridine kinase signature	78	89	-	-
	Trre5g05130	476	PRINTS	Uridine kinase signature	214	227	-	-
	Trre5g05130	476	PRINTS	Uridine kinase signature	48	65	-	-
	Trre5g05130	476	PRINTS	Uridine kinase signature	178	188	-	-
	Trre5g05130	476	PRINTS	Uridine kinase signature	192	203	-	-
	Trre5g05130	476	PRINTS	Uridine kinase signature	123	138	-	-
	Trre5g05130	476	CDD	PRTases_typeI	323	438	IPR000836	-
	Trre5g05130	476	Gene3D	-	250	465	IPR029057	-
	Trre5g05130	476	FunFam	Uridine kinase	250	465	-	-
	Trre5g05130	476	CDD	UMPK	50	246	IPR000764	-
	Trre5g05130	476	PANTHER	URIDINE KINASE	32	375	-	-
	Trre5g05130	476	Pfam	Uracil phosphoribosyltransferase	264	465	-	-
	Trre5g05130	476	Pfam	Phosphoribulokinase / Uridine kinase family	50	234	IPR006083	GO:0005524\|GO:0016301

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre5g05130	Trre-Chr5	52664037	52668836	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre5g05130	1	468	PRT Gene Family	AT4G26510	83.404	0.0	811

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre5g05130	K00876		-	gmx:100527893	882.478