Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05127 ATGGAAACACTGAAAGTTGAGTCATTGCAGAATCCACAAGAAATTGAAAATCAGAACACTTTTCAAGAAGAAGAAGAAAAAGAGGTAAAGCTAGACACTTTATTGGATCTAAATATTCCTAACAAAGATTGCGATCTTGGGTGCAATTCAGAGTCCAATAGAGTCATCTATTTGGACACAGATAATTCTTCTAAAACATCATTAGAAAATTACACCTGTGGCTCTGAATCATCAGAGCCACGGTTTTTTTCTTGCAACTTCTGCAAGAGAAAATTCTACAGTTCACAAGCACTTGGGGGACACCAAAATGCTCACAAAAAAGAGAGGTCAATTGCAAAGAGAAGACAGAGGTTTATAGGAACACACAAGATGAAAGGAACAACTTTTGGTATCCCATTTCTTCAAAATCATTTTCACCATAGTTATGCAAATATGGCATCTCTACTACCAATTCATGGTGTTAATATTAGTAGTAGTAGTAGTACTTTAAGACCACTTGGAATTAAGACTCACTCCATGATTCAGAAGCCTTTTCATAATTTTTCATCAAATGGATTTGGAAGCACTTATTATGGACATCATGGTTGGTCAAGACCACTTATGAATCAACAACCTGGAATAGGAAAACTAGCCATGGAAACTTACAAGGAAACAGGATTTTCATCGCGAGGTTATATTGGTCGATTCGAAGGAGTTAAAAAAGACATGCTCAATCCAGGAACTCATATGACCTTGAAGAGTAATCAAGAAGATGTGAAGAACCTTGACTTATCCTTAAAGCTATAA 786 0.3601 METLKVESLQNPQEIENQNTFQEEEEKEVKLDTLLDLNIPNKDCDLGCNSESNRVIYLDTDNSSKTSLENYTCGSESSEPRFFSCNFCKRKFYSSQALGGHQNAHKKERSIAKRRQRFIGTHKMKGTTFGIPFLQNHFHHSYANMASLLPIHGVNISSSSSTLRPLGIKTHSMIQKPFHNFSSNGFGSTYYGHHGWSRPLMNQQPGIGKLAMETYKETGFSSRGYIGRFEGVKKDMLNPGTHMTLKSNQEDVKNLDLSLKL 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05127 261 ProSiteProfiles Zinc finger C2H2 type domain profile. 83 110 IPR013087 -
Trre5g05127 261 ProSitePatterns Zinc finger C2H2 type domain signature. 85 105 IPR013087 -
Trre5g05127 261 SUPERFAMILY beta-beta-alpha zinc fingers 80 110 IPR036236 -
Trre5g05127 261 Gene3D Classic Zinc Finger 60 129 - -
Trre5g05127 261 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 13 261 IPR044246 GO:0009788
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05127 Trre-Chr5 52587288 52588073 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05127 74 261 C2H2 Transcription Factor Family AT5G10970 39.234 2.19e-29 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05127 - - tpra:123898424 459.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g00654 1 4925627 4926418 Trre5g05127 5 52587288 52588073 PCT