Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05125 ATGGATGATTCCGGTGATCGGTTTCCCATCGGAATGCGTGTACTTGCCGTTGACGATGATCCTACTTGTCTTTTGGTTTTGGAAACTTTGCTCCGAAGATGTCAATACCATGTAACCACGACTAGTCAAGCAAGAACGGCATTGACTATGTTGAGAGAAAACAAAGACAAGTTTGACTTGGTTATTAGTGACGTGCACATGCCTGACATGGATGGATTTAAGCTGCTTGAACTTGTGGGACTTGAGATGGACCTTCCTGTCATAATGTTGTCTGCATATGGTGATACGAAGCTTGTGATGAAGGGAATTTCCCACGGTGCCTGTGATTATCTGCTGAAACCTGTGAGGTTAGAGGAGCTAAAGAACATATGGCAGCATGTAATTAGGAAGAAGAAGTCTGATCCAAAGGACAAAAACAAAGCCAGCAAACCAGACAAAACTACTTCTGATAGTGGCAGTGGACTAAGATCAGCAGGACCAGAACATACAGATGAAAATGGGAAGCTGACTAAGAAAAGGAAGGATCAGGATGAAGACGAAGATGAAGATAAAGAGAATGGTAATGACAATGAGGACCCATCTGCCCAGAAGAAGCCCCGGGTTGTTTGGTCTGTGGAGCTGCACCGCAAGTTTGTTGCTGCTGTTAATCAGCTGGGCATTGACAAGGCTGTACCCAAAAAAATTCTTGATATGATGAATGTCGAAAACATTACAAGGGAGAACGTGGCGAGTCATCTCCAGAAGTATAGACTTTATCTGAAAAGAATTAGCTGTGTGGCAAACCAGCAAGCTAGTATGGTGGCAGCCTTAGGGAGTGCAGATCAATCTTATTTGAGAATGGGTGGTTCTGGACATTTTCACAATAATGCTTTCAGATCCTTTCCACCTAATGGGATAATTAGTAATCTGAACACTCCAACTGGTCTGAATGGGCATGGATTTTCTCCTTCCGGACTACTTCAGTTGGGCCAATCACAAAATTTTAACAACTCTTCCAATGATCAACTTAAATTCCAGTCGACTATAACCCCAGTTAATCAGAATATTCTTCAAGGAATGCCAATGTCCATAGGGTTTGATCACTTACAAAACAACAGCAAGGGTGTTTTTCCTGTTCAAAACTTGAATACTGATGTGAAACCAACTTTTCCCATCCCAAATAAATTCCCAGATCAAAGACCAAAACTAGCCACCTCTAATTCTCATCCCCCAAGTCTCGGTATCTCGAACAATGGCTTGATTTTGGAAACACACCCTGATGTAAAACACGGAGGTATAGGAATAGGATATGGAAGTTCGTCTTCTTCCGTAGCCTCTCAACATTCAGAATTTTCTTTCTCTATGCTGGATCAAGGTAGGCATAGTGATAATTGGTCAAGCGTCATGCCGTTATCTGGAATCCAGACAAATTCTTTCCCTTCAAGTGAATGTTTTAGACAGACAGCTATTCCTCCTTCAGATAACATGGCTTCTTTGCCCTTGCAAGCGGGGTATCCCGGTGGGTCATTGGCAGATGTGCACTCCCAAGGAATGATTTTTACTAATCCACCTGAGTATATAAACGGTAATTTGCCATTTCAAGGATGGGAGGACCGTAATCAGGATGCCGCTTACCGCTCAAATGTTACTTGTGGATCAATTAACTCTCTTGCTCCAGTTAACGGTGCCGTTGTTCAACCAGGCCAAACAACCACTAACTCAACCTTGCACAGAAACTTGGACACTAAATTTTGTGATCCCATACAAATGAAGCATGCTGGATTCGCTGATTTATCTGAATGCAGCTCATCAAGACAACCTCGAGTGAATATATTAAGCCAGCAGAAGTTTTCTAATAATCTTGGTTCACTGGAATACTTGGCGAGTTCAATGATGGAACAGGAGCAAGATAAGATGAAATTATTGGGCGGAGACTTCATATGCGATAGCTACTCTGGCGGAGTATCTTTGTGA 1953 0.425 MDDSGDRFPIGMRVLAVDDDPTCLLVLETLLRRCQYHVTTTSQARTALTMLRENKDKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSAYGDTKLVMKGISHGACDYLLKPVRLEELKNIWQHVIRKKKSDPKDKNKASKPDKTTSDSGSGLRSAGPEHTDENGKLTKKRKDQDEDEDEDKENGNDNEDPSAQKKPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDMMNVENITRENVASHLQKYRLYLKRISCVANQQASMVAALGSADQSYLRMGGSGHFHNNAFRSFPPNGIISNLNTPTGLNGHGFSPSGLLQLGQSQNFNNSSNDQLKFQSTITPVNQNILQGMPMSIGFDHLQNNSKGVFPVQNLNTDVKPTFPIPNKFPDQRPKLATSNSHPPSLGISNNGLILETHPDVKHGGIGIGYGSSSSSVASQHSEFSFSMLDQGRHSDNWSSVMPLSGIQTNSFPSSECFRQTAIPPSDNMASLPLQAGYPGGSLADVHSQGMIFTNPPEYINGNLPFQGWEDRNQDAAYRSNVTCGSINSLAPVNGAVVQPGQTTTNSTLHRNLDTKFCDPIQMKHAGFADLSECSSSRQPRVNILSQQKFSNNLGSLEYLASSMMEQEQDKMKLLGGDFICDSYSGGVSL 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05125 650 Gene3D - 194 257 - -
Trre5g05125 650 PIRSF RR_ARR_type-B 1 647 IPR017053 GO:0003677|GO:0003700|GO:0009736
Trre5g05125 650 MobiDBLite consensus disorder prediction 161 179 - -
Trre5g05125 650 Pfam Response regulator receiver domain 14 122 IPR001789 GO:0000160
Trre5g05125 650 SMART REC_2 12 124 IPR001789 GO:0000160
Trre5g05125 650 PANTHER TWO-COMPONENT RESPONSE REGULATOR 12 327 IPR045279 GO:0009736
Trre5g05125 650 CDD REC_typeB_ARR-like 14 128 - -
Trre5g05125 650 ProSiteProfiles Response regulatory domain profile. 13 128 IPR001789 GO:0000160
Trre5g05125 650 MobiDBLite consensus disorder prediction 130 145 - -
Trre5g05125 650 SUPERFAMILY CheY-like 11 132 IPR011006 -
Trre5g05125 650 FunFam Two-component response regulator 194 257 - -
Trre5g05125 650 Gene3D - 11 148 - -
Trre5g05125 650 MobiDBLite consensus disorder prediction 130 200 - -
Trre5g05125 650 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 195 254 IPR017930 -
Trre5g05125 650 NCBIfam myb-like DNA-binding domain, SHAQKYF class 198 251 IPR006447 GO:0003677
Trre5g05125 650 SUPERFAMILY Homeodomain-like 196 255 IPR009057 -
Trre5g05125 650 Pfam Myb-like DNA-binding domain 200 250 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05125 Trre-Chr5 52576223 52580181 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05125 6 419 Response Regulator Gene Family AT2G25180 54.233 2.35e-131 397
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Trre5g05125 Response_reg 2.7e-23 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05125 K14491 - gmx:100809002 847.04