Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05123 ATGAGTAGCTTGGTTGAGAGGCTTCGTGTAAGATCAGATCGGAAGCCAATTTATAATATTGACGAGTCAGATGATGATGATTTTTTGGTTAAAAAACCTGGGACAAGTCAGGAAAAGTTTGAAAGGATAGATAGAGATGATGCGAAAGAGGATTTATGTCAAGCCTGTGGTGAAAGCGGAGATCTCCTGAGTTGTGAAACTTGCACTTACGCTTACCATTCTAGGTGTTTACTTCCACCACTTAAAGGTCCTGCTCCCAACAACTGGAGGTGCCCTGAATGTGTTAGCCCCCTTACTGATATTGATAAGTTATTAGACTGTGAGATGCGCCCTACTGTAGAAGGTGATGACGACGATGACACCACAAAATCTGGATCAAAGCAAGTTTTTGTGAAGCAATACCTTGTTAAGTGGAAGGGACTATCATACCTGCACTGTACATGGGTGCCCGAGAAAGAGTTTCTGAAAGCTTTTAAGAATCATCCTCGTCTGAAGACCAAAGTGAACAACTTCCACCGTCAAATGGCATCCTCCAATACCTCAGATGAAGACTTTGTTGCCATTCGTCCTGAATGGACTACAGTTGATCGAATAATTGCTTGCAGGGGTGATGATGAGGAGAGGGAATATCTGGTGAAGTGGAAAGAGCTTCCGTACGATGAATGTTATTGGGAATATGAGTCTGATATTTCTGCATTTCAGCCAGAAATAGAAAGATTCAATAAATTTCGTTCTAGATCAAGCAAACTTGCTTACATTAAGCAGAAAAGCCGTGTTAATGATGACAGTGAATTGAAGAAACAGCAGAAAGAATTTCAACAGTATGAACATAGCCCCAAGTTTCTTTCAGGTTCTCTACACCCATATCAGCTTGAAGGCTTGAATTTCTTACGATTCTCTTGGTCCAAGCAAACACATGTTATACTTGCCGATGAAATGGGACTTGGAAAAACCATACAAAGTATTGCTTTCTTAGCATCCCTTTTTGAAGAGGGCATTTGTACACATCCACATCTGGTGGTTGCTCCACTTTCAACGCTGCGAAACTGGGAACGTGAATTTGCAACATGGGCCCCTCAAATGAATGTTATTATGTATGTTGGATCTGCCCAAGCTCGCAGTGTTATCAGAGAATATGAATTTTACTATCCCAAGAAAGTGAAGAAGATTAAGAAAAAGAAATCTGGTCAGATAGTTAGTGAAAGTAAGCATGACAGGATTAAGTTTGACGTCCTTTTGACATCATATGAGATGATCAACTTAGACACAACTTCATTAAAACCTATAAAATGGGAGTGCATGATAGTTGATGAAGGTCACCGCCTCAAAAATAAGGATTCAAAATTATTTTCTTCATTGAAGCAATATTCTACCAGACACCGTGTGCTCTTGACTGGAACTCCTCTTCAGAACAACTTGGATGAACTTTTTATGCTTATGCATTTCCTTGATGCCGGGAAGTTTGCAAGTTTAGAGGAATTCCAAGAAGAGTTCAAGGATATTAATCAAGAGGAACAGATTTCAAGGCTTCATAAAATGCTGGCCCCGCATCTTTTGCGAAGAGTGAAGAAAGATGTCATGAAGGAACTACCTCCTAAAAAGGAACTTATTCTACGAGTTGATTTGAGTAGCAAGCAGAAAGAATATTACAAGGCAATTTTGACCCGTAATTATCAGATATTAACTCGCCGTGGTGGTGCACAGATTTCTCTTATCAATGTTGTTATGGAACTGCGTAAGCTCTGTTGTCATGCTTACATGTTAGAAGGAGTTGAGCCAGACATTGACGATCCAAAAGAAGCATTCAAACAATTGCTAGAATCATCAGGGAAGTTGCACTTGCTGGACAAGATGATGGTGAAGCTTAAAGAGCAAGGACACAGAGTTCTCATATACTCCCAATTTCAGCACATGCTTGATTTGCTTGAAGATTACTGCTCTTACAAGAAATGGCAGTATGAAAGGATAGATGGAAAGGTTGGTGGAGCTGAAAGGCAAATACGGATAGATCGTTTTAATGCCAAAAATTCTTCAAGATTTTGCTTTCTTCTTTCTACAAGAGCTGGGGGTTTGGGGATAAACCTTGCAACCGCTGACACAGTTGTTATATATGACAGTGACTGGAATCCTCATGCTGACTTACAAGCAATGGCTAGAGCTCATCGACTTGGACAGACTAACAAGGTGTTGATTTATAGACTTATAACGCGGGGAACAATTGAAGAAAGGATGATGCAAATGACTAAGAAGAAAATGGTGTTAGAACACCTTGTTGTAGGGAGGCTAAAGGCTCAAAATATCAACCAGGAAGAGTTGGATGACATCATACGGTATGGCTCAAAGGAGTTATTTGCAGATGAGAATGACGAAGCAGGAAAATCCCGTCAAATCCATTATGATGCAGCTGCTATCGATAGGTTGCTGGATCGTGACCAAGTTGTAGATGAAGAGGCTACTTTGGATGATGAAGATGAAGATGGATTTCTGAAGGCCTTTAAGGTTGCAAATTTTGAGTATGTTGATGAGGCTGAGGCTGCAGCAGAGGAGGAGGCAGCACAAAAAAGAGCAATGGAAACCGTGAACAGTTCAGAGAGAACACATTATTGGGAAGAGTTGTTAAAAGACAAGTTTCAGGAGCATAAAGTTGAGGAGTTCAATGCTTTGGGCAAAGGGAAGAGAAACCGCAAGTTGATGGTTTCTGTTGAGGAGGACGACCTTGCTGGTTTGGAAGATGTAAGCTCTGACGAAGACGACAATTATGAAGCAGAGCTTACTGATGGCGATTCAAATTCCACCGGAACTACTACTACTAGAAGGCCGTACAAGAAAAAAGCACGCACAGATAGCACTGAGCCACTTCCTCTGATGGAAGGTGAAGGGAAAGCATTCAGAGTACTTGGTTTTAATCAAAATCAGAGGGCTGCCTTTGTGCAAATTTTGATGAGGTTCGGGGTTGGTGACTTTGATTGGAAGGAGTTTACTTCCCGCATGAAACAGAAGACTTATGAAGAAATCAAAGATTATGGAACCCTTTTCTTGTCTCATATCGCTGAAGATATAACTGATTCCTCTACATTCACAGATGGTGTTCCAAAAGAAGGACTCCGGATCCAAGATGTACTTGTTAGGATTGCAGTCCTGCTCTTGATAAGGGACAAAGTGAAGTTTGCAACAGAACATCCTCAAACTCCACTGTTTTCAGATGACATCTTATTACGTTATCCAGGTTTGAAGGGTATAAGGAAGTGGAAGGAGGAGCATGATTTTACACTGCTTCGTGCTGTGTTAAAACATGGGTATGGAAGGTGGCAAGCTATTGTTGATGATAAGGATCTGAAGATTCAGGAGATCATCTGTCAGGAGTTGAATCTTCCCGTTATAAATTTACCAGGACCAGGACAAATTGGCTCTCAAATACAAAATGGTGCAAATTTGGCAAATACAGAAATCCCCAGCAATGAATCCAGGGAAAATGGTGGAAGTGGCATAGCAGCTGATGGTGCACAAGGTTCAGGTGATGTTAGGAACCAACCACAGCTATATCAAGAATCGTCCATGTTATATCATTTTAGAGACATGCAAAGAAGACAGGTTGAGTTTGTAAAAAAGAGGGTTCTTCTTTTGGAAAAGGGACTAAATGCTGAGTACCAGAAAGAATACTTTGGTGATCCAAAAGCAGGTGAAGTAACCAACGAAGAACTTAAAAGTGAACCCAAGCCTACCACTATTCCAAGTTATAAATCAGTGGATACTGATACCCAGATGATTGATCAATTACCACAAGTAGAAACAATAGCTCCAGAAGATATTTCGGTTGCTTGTGACAGTGATCCAAATCGATTGGAATTAGTTCGGCTTTACAATGAGATGTGCAAGGTAGTCGAGGAAAACCCCACAGATTTAGTACAAGCGTCATTGGCAAGAGAATCAGCAGAGGTCAACACAGTGAAGAAGTTTCCACCACTAGAAACCATCTGTGAAGATGTGAACAGAATTCTAACACCCACAGTTGAACAGCCTATTTCAGAAACTCCAATATTAAACTCAGATAACAAATCAGAGGCAATATCACATGACGACGAGACTAAAGATATGGCAATAGACGCTGATCCTGTAAAAGAAAGCGGCTCAAGTCTCGTAATTGAGAAGGAAACACCTAGTCTTGCGGAGAAAAAGGAAAGCAATACAGAGATGAATGAAAGTAGCAACACTGAGTTGGATGAGAACACACCGAATTCTGATGCTGGAGTAATTGTATTGGATGCATAA 4269 0.4078 MSSLVERLRVRSDRKPIYNIDESDDDDFLVKKPGTSQEKFERIDRDDAKEDLCQACGESGDLLSCETCTYAYHSRCLLPPLKGPAPNNWRCPECVSPLTDIDKLLDCEMRPTVEGDDDDDTTKSGSKQVFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKNHPRLKTKVNNFHRQMASSNTSDEDFVAIRPEWTTVDRIIACRGDDEEREYLVKWKELPYDECYWEYESDISAFQPEIERFNKFRSRSSKLAYIKQKSRVNDDSELKKQQKEFQQYEHSPKFLSGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFEEGICTHPHLVVAPLSTLRNWEREFATWAPQMNVIMYVGSAQARSVIREYEFYYPKKVKKIKKKKSGQIVSESKHDRIKFDVLLTSYEMINLDTTSLKPIKWECMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFASLEEFQEEFKDINQEEQISRLHKMLAPHLLRRVKKDVMKELPPKKELILRVDLSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHAYMLEGVEPDIDDPKEAFKQLLESSGKLHLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYCSYKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVVIYDSDWNPHADLQAMARAHRLGQTNKVLIYRLITRGTIEERMMQMTKKKMVLEHLVVGRLKAQNINQEELDDIIRYGSKELFADENDEAGKSRQIHYDAAAIDRLLDRDQVVDEEATLDDEDEDGFLKAFKVANFEYVDEAEAAAEEEAAQKRAMETVNSSERTHYWEELLKDKFQEHKVEEFNALGKGKRNRKLMVSVEEDDLAGLEDVSSDEDDNYEAELTDGDSNSTGTTTTRRPYKKKARTDSTEPLPLMEGEGKAFRVLGFNQNQRAAFVQILMRFGVGDFDWKEFTSRMKQKTYEEIKDYGTLFLSHIAEDITDSSTFTDGVPKEGLRIQDVLVRIAVLLLIRDKVKFATEHPQTPLFSDDILLRYPGLKGIRKWKEEHDFTLLRAVLKHGYGRWQAIVDDKDLKIQEIICQELNLPVINLPGPGQIGSQIQNGANLANTEIPSNESRENGGSGIAADGAQGSGDVRNQPQLYQESSMLYHFRDMQRRQVEFVKKRVLLLEKGLNAEYQKEYFGDPKAGEVTNEELKSEPKPTTIPSYKSVDTDTQMIDQLPQVETIAPEDISVACDSDPNRLELVRLYNEMCKVVEENPTDLVQASLARESAEVNTVKKFPPLETICEDVNRILTPTVEQPISETPILNSDNKSEAISHDDETKDMAIDADPVKESGSSLVIEKETPSLAEKKESNTEMNESSNTELDENTPNSDAGVIVLDA 1422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05123 1422 MobiDBLite consensus disorder prediction 907 924 - -
Trre5g05123 1422 ProSitePatterns Zinc finger PHD-type signature. 53 94 IPR019786 -
Trre5g05123 1422 Gene3D - 181 242 - -
Trre5g05123 1422 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 523 779 IPR027417 -
Trre5g05123 1422 SUPERFAMILY Chromo domain-like 65 177 IPR016197 -
Trre5g05123 1422 CDD CD2_tandem 191 242 - -
Trre5g05123 1422 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 274 521 IPR027417 -
Trre5g05123 1422 SUPERFAMILY Chromo domain-like 180 243 IPR016197 -
Trre5g05123 1422 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 23 1401 - -
Trre5g05123 1422 SMART DUF1087_2 842 908 IPR009463 -
Trre5g05123 1422 MobiDBLite consensus disorder prediction 1149 1176 - -
Trre5g05123 1422 ProSiteProfiles Chromo and chromo shadow domain profile. 99 183 IPR000953 -
Trre5g05123 1422 MobiDBLite consensus disorder prediction 907 954 - -
Trre5g05123 1422 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 30 100 IPR013083 -
Trre5g05123 1422 CDD CD1_tandem 101 173 - -
Trre5g05123 1422 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 298 486 IPR014001 -
Trre5g05123 1422 Pfam SNF2-related domain 306 587 IPR000330 GO:0005524|GO:0140658
Trre5g05123 1422 Gene3D - 101 176 - -
Trre5g05123 1422 SMART helicmild6 640 724 IPR001650 -
Trre5g05123 1422 SMART PHD_3 52 95 IPR001965 -
Trre5g05123 1422 Pfam CHD subfamily II, SANT-like domain 935 1068 IPR009462 GO:0003677|GO:0006338
Trre5g05123 1422 SMART chromo_7 98 169 IPR000953 -
Trre5g05123 1422 SMART chromo_7 191 245 IPR000953 -
Trre5g05123 1422 SMART DUF1086_2 914 1071 IPR009462 GO:0003677|GO:0006338
Trre5g05123 1422 MobiDBLite consensus disorder prediction 1353 1370 - -
Trre5g05123 1422 SMART ultradead3 282 497 IPR014001 -
Trre5g05123 1422 Coils Coil 840 860 - -
Trre5g05123 1422 Pfam Chromo (CHRromatin Organisation MOdifier) domain 194 242 IPR023780 -
Trre5g05123 1422 Pfam Chromo (CHRromatin Organisation MOdifier) domain 120 159 IPR023780 -
Trre5g05123 1422 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 614 775 IPR001650 -
Trre5g05123 1422 Pfam Helicase conserved C-terminal domain 612 724 IPR001650 -
Trre5g05123 1422 Pfam PHD-finger 53 95 IPR019787 -
Trre5g05123 1422 Pfam CHD subfamily II, DUF1087 847 905 IPR009463 -
Trre5g05123 1422 Gene3D - 283 530 IPR038718 -
Trre5g05123 1422 Gene3D - 531 755 IPR027417 -
Trre5g05123 1422 MobiDBLite consensus disorder prediction 1340 1422 - -
Trre5g05123 1422 ProSiteProfiles Chromo and chromo shadow domain profile. 193 242 IPR000953 -
Trre5g05123 1422 ProSiteProfiles Zinc finger PHD-type profile. 50 97 IPR019787 -
Trre5g05123 1422 CDD SF2_C_SNF 609 735 - -
Trre5g05123 1422 Gene3D - 1038 1215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05123 Trre-Chr5 52545317 52566981 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05123 603 775 RAD5 or RAD16-like Gene Family AT5G22750 32.948 8.09e-23 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Trre5g05123 SNF2_N 1.1e-65 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05123 K11643 - gmx:100804203 2407.48