Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05120 ATGGCTAAGTGTCACCGGAGCAACGCTGATTCACTAGTTATCGATCACCGCCACCATGCTAAGAACACCACCGCAGGTAATTTCCGTCTCTCCGCTTTATTCCGCCGCATCATTTTCGACGCTTTAAGCTGCGGTGGAACATCTCGTTACCGAAATCACCACCGCGATGAAGCCGTTAGCTGCGCCTCCGCCGTATCGACGGTAAATTTGTCCGCCGGTAGTCAAAAAGAAAAGCAACAAGTACGAGAAGTGAAGCAAGAGAAGAAGCTATCGGATATTCTGAACATACAGGTGCATGAAATTGAAGCGGAATCTAAGAAGGAAGAGATATTGACGGAGCTGAAACAAGTGGTGAAGGAATTGCGTGAAGAGGATTCCACGAAACGGCGAATCGCGGCGGCGAGAGTTAGGTCACTGGCGAAAGATGATTCAGAAGCGAGAGGCACACTCGCAATGCTTGGAGCAATTTCTCCTCTCGTTGGAATGCTCGATTCAGAAGATCTTCATTCTCAGATCGATTCTCTCTATGCATTGCTCAATCTCGGAATCGGTAACGATGCAAATAAAGCAGCGATTGTGAAAATTGGTTCTGTTCACAAGATGCTGAAGATCATTGAATCTTCGTGTGTTGTCGATTCATCGGTTTCTGAGGCAATTGTTGCGAATTTCCTTGGATTAAGTGCTTTGGATTTGAACAAACCAATAATTGGATCCTCTGGTGCAATACCCTTTCTAGTTAGAACTCTCCAAAATTTAGACAGTAGTGGTAAGAGTAGTTCCCAAGTTAAGCAGGATGCTCTTCGGGCTCTTTACAATCTTACGATCAATCAAGCGAACATTTCATTTGTTTTGGAAACCGATTTGGTATCGTTTCTGATAAACTTGATAGAAGATATGGAAGTGAGTGAGAGAGTTCTTTCTATTTTGAGCAATTTGGTGTCGAGTCCGGAAGGTAGAAAAGCTATTAGTGCTGTTAGGGATGCAATCACAATTTTGGTTGATGTATTGAATTGGACAGATTCGCCTAAATGTCAAGAGAAGGCTTCATACATTTTGATGATTATGGCACACAAAGCTTATTCTGATAGGCAGGCTATGATTGAGGCAGGGATTGTATCGTCATTGCTTGAGTTGACGCTTGTGGGCACCGCTTTGGCACAAAAAAGGGCGTCAAGGATATTGGAATGTTTTAGGGTAGACAAAGGGAAGCAGGTTTCTGGGAGCTATGATGGTGGAAACTTGAGTTTAACTGTCTCTGCGCCAATTTGTTCCTCGTCGTCTTCTTTTGTGAAGACAGATGGAGGAGGTAAAGAGTATTTAGTGGACGAAGCGAACATCATGAGTGATGAAAAGAAAGCAGTGAAGCAACTTGTTCAGCAGAGTTTGCAGAACAACATGATGAAAATTGTCAAGAGGGCTAACTTGAAGCAAGATTTCGTTCCTTCACAGCATTTCTCTTCGCTCACTTCAAGTTCGACGTCAAAGAGCCTGCCATTTTGA 1500 0.4367 MAKCHRSNADSLVIDHRHHAKNTTAGNFRLSALFRRIIFDALSCGGTSRYRNHHRDEAVSCASAVSTVNLSAGSQKEKQQVREVKQEKKLSDILNIQVHEIEAESKKEEILTELKQVVKELREEDSTKRRIAAARVRSLAKDDSEARGTLAMLGAISPLVGMLDSEDLHSQIDSLYALLNLGIGNDANKAAIVKIGSVHKMLKIIESSCVVDSSVSEAIVANFLGLSALDLNKPIIGSSGAIPFLVRTLQNLDSSGKSSSQVKQDALRALYNLTINQANISFVLETDLVSFLINLIEDMEVSERVLSILSNLVSSPEGRKAISAVRDAITILVDVLNWTDSPKCQEKASYILMIMAHKAYSDRQAMIEAGIVSSLLELTLVGTALAQKRASRILECFRVDKGKQVSGSYDGGNLSLTVSAPICSSSSSFVKTDGGGKEYLVDEANIMSDEKKAVKQLVQQSLQNNMMKIVKRANLKQDFVPSQHFSSLTSSSTSKSLPF 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05120 499 Gene3D - 256 407 IPR011989 -
Trre5g05120 499 Gene3D - 95 255 IPR011989 -
Trre5g05120 499 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 24 499 - -
Trre5g05120 499 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 240 279 IPR000225 GO:0005515
Trre5g05120 499 Coils Coil 104 124 - -
Trre5g05120 499 SUPERFAMILY ARM repeat 113 397 IPR016024 -
Trre5g05120 499 SMART arm_5 185 228 IPR000225 GO:0005515
Trre5g05120 499 SMART arm_5 143 183 IPR000225 GO:0005515
Trre5g05120 499 SMART arm_5 276 314 IPR000225 GO:0005515
Trre5g05120 499 SMART arm_5 229 275 IPR000225 GO:0005515
Trre5g05120 499 SMART arm_5 318 357 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05120 Trre-Chr5 52505849 52507597 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05120 109 398 U-box Gene Family AT2G23140 32.990 1.00e-32 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05120 - - gmx:100818576 616.305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g00647 1 4870091 4872045 Trre5g05120 5 52505849 52507597 PCT