Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05115 ATGGAACCAACGTGTGTGGATACTTCTCTCAACCTTAACATTGTCCCTTCTAGAAACGATACAATCGTTGATACCATGGTTGCTGATCAAGTTTTGGTTGAAGAATTGGAGCGTCTAAGTCATGAGAATAAGAGATTAACTGAGAAGTTGAACCACATGTGTGACAATTATGTTGCTTTGCAAAAACATTTGAGTCAATTTAGTCACACAAATTTTGAAAATGAATTAGCAATGATGACACAATCGCGGAAGAGAAATGCCGAAAGCATTGAAAAAAATTGTATAAATCAGTTTGGCTATGCTATTGCTGAGAGCAGCACAATTACTACTGATCATGAAGAGACAACATTCAAACACAACAACATTAACTCACCAAAAATTTCCAAGGTTCTTGTACCAACAGATGCATCTAATACCAGCTTATATGTGAGAGATGGATATCAGTGGAGAAAGTATGGTCAGAAAGTTACTAGAGATAACCCCTGTCCTAGGGCTTACTTCAAGTGTTCCTTTGCTCCTGGCTGCCCAGTCAAGAAGAAGGTGCAAAGAAGTGTAGAAGACCCTTCCATATTAGTGACAACATACGAAGGAGAACACAACCATCCACATCACCAAGCACAAATACAAATGAGTAGTAGTTCAAACCAAAGTGAAACAAACTCTACATATTTGGCTCCAAGGAATCCAACTTCAACGCTTGACTTGGTCACACCAAGAAAATTGATAGCAATTGAAGATGCTCAAAAGTCTTCTATGCAGCAGCTATTAATTCACCAAATGGCTACTTCTTTGACAAGAGATCCTAATTTCGCCACAGCACTTGCCAATGCCATTTCAGGAAGAATTTTGGATTTGGAAAAACGATGA 867 0.3852 MEPTCVDTSLNLNIVPSRNDTIVDTMVADQVLVEELERLSHENKRLTEKLNHMCDNYVALQKHLSQFSHTNFENELAMMTQSRKRNAESIEKNCINQFGYAIAESSTITTDHEETTFKHNNINSPKISKVLVPTDASNTSLYVRDGYQWRKYGQKVTRDNPCPRAYFKCSFAPGCPVKKKVQRSVEDPSILVTTYEGEHNHPHHQAQIQMSSSSNQSETNSTYLAPRNPTSTLDLVTPRKLIAIEDAQKSSMQQLLIHQMATSLTRDPNFATALANAISGRILDLEKR 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05115 288 ProSiteProfiles WRKY domain profile. 138 204 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre5g05115 288 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 30 282 IPR044810 GO:0003700
Trre5g05115 288 FunFam WRKY transcription factor 40 128 205 - -
Trre5g05115 288 MobiDBLite consensus disorder prediction 200 231 - -
Trre5g05115 288 Gene3D WRKY domain 128 203 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre5g05115 288 Pfam WRKY DNA -binding domain 145 202 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre5g05115 288 Coils Coil 29 56 - -
Trre5g05115 288 MobiDBLite consensus disorder prediction 204 231 - -
Trre5g05115 288 SMART WRKY_cls 143 203 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre5g05115 288 SUPERFAMILY WRKY DNA-binding domain 140 203 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05115 Trre-Chr5 52427544 52429868 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05115 6 282 WRKY Transcription Factor Family AT1G80840 44.218 1.26e-69 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre5g05115 WRKY 1.8e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05115 - - gmx:100127373 321.627
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g00604 1 4594748 4596621 Trre5g05115 5 52427544 52429868 PCT