Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05104 ATGGGAATATATCTGAGCACTCCCAAAACTGAAAAGTTTTCTGAAGATGGAGAAAATGATTGTCTTAGATATGGTTTATCATCTATGCAAGGATGGCGTGCATCAATGGAAGATGCTCATGCTGCATATACTGATCTGGATGGTTCTACTTCATTTTTTGGTGTTTATGATGGTCATGGAGGTAAGGTGGTTGCAAAGTTTTGTGCTAAGTTTCTTCATCATCAGATGCTCAAAAGTGAAGCATACTCAGTTGGAGATATAGGAACCTCTCTTCAGCAAACATTCTTAAGAATGGATGAGATGATGCGTGGTCAAAGAGGATGGAGGGAGCTATCGATATTGGGAGATAAGATGAACAAGTTTAGTGGAATGATAGAAGGGTTGATTTGGTCTCCACGAAGCAACAATGGTATTAGCCGAGCTGATGATTGGGCTTTTGAGGAGGGACCTCACTCTGACTTTGCTGGACCAACTTCAGGAAGCACAGCCTGCGTCGCAGTTGTTAGAAACAACCAACTTGTTGTTGCAAATGCTGGTGATTCACGCTGTGTAATATCTCGGAAGGGGCAGGCGTACAATTTATCTAGAGACCACAAACCTGATCTTGAGATTGAAAAGGAAAGAATCTTAAAAGCTGGTGGTTTTATTCATGCAGGCCGAATTAATGGCAGTTTAAACCTTGCAAGAGCTATTGGTGACATGGAATTTAAACAGAATAAATTTCTTCCTGCTGAAAAACAAGTTGTAACTGCCAATCCTGATATAAACACTGTCGAGCTTTGTGATGAAGATGAATTTATGGTGCTAGCTTGTGATGGCATATGGGACTGCTTGTCAAGTCAACAATTGGTAGATTTTGTTCATGAACAATTGCGTTCGGAAACAAAGCTTTCTACAGTGTGCGAAAAAGTACTTGACCGGTGTTTGGCACCATCAACTGCTGGTGGCGAAGGATGTGATAACATGACCATGATCTTGGTGCAGTTCAAAAAACCTGCTCAGTCTAGTGCACCAGCAGAAGAGCAATCCTCATCAAACGTAGAAGCTGAAGCACAAGGTGAACCGAAACTGGAAAGAAGCGAAGTTTAG 1089 0.4169 MGIYLSTPKTEKFSEDGENDCLRYGLSSMQGWRASMEDAHAAYTDLDGSTSFFGVYDGHGGKVVAKFCAKFLHHQMLKSEAYSVGDIGTSLQQTFLRMDEMMRGQRGWRELSILGDKMNKFSGMIEGLIWSPRSNNGISRADDWAFEEGPHSDFAGPTSGSTACVAVVRNNQLVVANAGDSRCVISRKGQAYNLSRDHKPDLEIEKERILKAGGFIHAGRINGSLNLARAIGDMEFKQNKFLPAEKQVVTANPDINTVELCDEDEFMVLACDGIWDCLSSQQLVDFVHEQLRSETKLSTVCEKVLDRCLAPSTAGGEGCDNMTMILVQFKKPAQSSAPAEEQSSSNVEAEAQGEPKLERSEV 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05104 362 ProSiteProfiles PPM-type phosphatase domain profile. 23 329 IPR001932 -
Trre5g05104 362 MobiDBLite consensus disorder prediction 335 350 - -
Trre5g05104 362 CDD PP2Cc 23 329 IPR001932 -
Trre5g05104 362 PANTHER PROTEIN PHOSPHATASE 2C 20 328 IPR015655 GO:0004722|GO:0006470
Trre5g05104 362 SMART PP2C_SIG_2 28 329 IPR001932 -
Trre5g05104 362 ProSitePatterns PPM-type phosphatase domain signature. 52 60 IPR000222 GO:0043169
Trre5g05104 362 SUPERFAMILY PP2C-like 3 331 IPR036457 -
Trre5g05104 362 Gene3D - 1 330 IPR036457 -
Trre5g05104 362 SMART PP2C_4 12 327 IPR001932 -
Trre5g05104 362 Pfam Protein phosphatase 2C 142 313 IPR001932 -
Trre5g05104 362 Pfam Protein phosphatase 2C 23 104 IPR001932 -
Trre5g05104 362 MobiDBLite consensus disorder prediction 333 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05104 Trre-Chr5 52342164 52345982 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05104 1 341 PP2C-type Phosphatase Gene Family AT2G25070 77.419 0.0 583
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05104 K17499 - gmx:100787778 637.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05104 5 52342164 52345982 Trre5g05104 5 52342164 52345982 ECH