Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05093 ATGTCTTCTAAACTATGCGACTATTGCAAATCCGCCACCGCTACTCTCTACTGCCGCCCTGACTCCGCCTTCCTCTGCGGCGACTGTGACTCCGAAGTTCACGCTGCTAACAAACTCGCCTCCCGTCATCCTCGCGTCACTCTCTGTGAAGTCTGCGAGCAAGCACCTGCACATGTCACCTGTAAAGCCGATGCAGCTTCTCTATGCATCACCTGCGATCGTGACATCCACTCTGCCAATCCCCTCGCCGCACGTCACGAGCGTATTCCTGTTACTCCTTTCTTCGAATCCACCACTGTTAAATCTTTTCACAATAATAATAACCACTACGATGCTGTTAAAGATGAAGCCGAAGCAGCTTCGTGGCTGATCTCCGATCCGAAAACAGATCTCAACTCTTCTCCTTATATGTTCTCCGATTCCGAAGCTATTCCGTTTATGGATCTAGATTACGGTGTTATCGAACATAAAAACGACGGTGTAGTTCCTGTTCACGGTAACTTCGATCCTTTCGCTTCTGCTTATAAGAACAACACACATACAGACTTAGAAACAACGTCACCGTCGCAGATTAGTAACAGTGTTTCATCGTCGATGGAGGTTGGAGTTGTTCCAGATGGAAACGCCGTATCGGAGATATCAAACTGTGGATACGGTAAGGCGGTGGCGGCGGATCGAGAAGCGAGAGTATTGAGGTATAAGGAGAAGAGGAAGAATCGAAGATTCGAGAAGACGATTCGTTATGCTTCTCGTAAAGCTTATGCAGAAACTAGACCAAGAATCAAAGGAAGGTTTGCGAAACGCACCGATACCGTTGATACTATTTCTGGATACGGCGTCGTTCCTACATGTTGA 855 0.4749 MSSKLCDYCKSATATLYCRPDSAFLCGDCDSEVHAANKLASRHPRVTLCEVCEQAPAHVTCKADAASLCITCDRDIHSANPLAARHERIPVTPFFESTTVKSFHNNNNHYDAVKDEAEAASWLISDPKTDLNSSPYMFSDSEAIPFMDLDYGVIEHKNDGVVPVHGNFDPFASAYKNNTHTDLETTSPSQISNSVSSSMEVGVVPDGNAVSEISNCGYGKAVAADREARVLRYKEKRKNRRFEKTIRYASRKAYAETRPRIKGRFAKRTDTVDTISGYGVVPTC 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05093 284 ProSiteProfiles Zinc finger B-box type profile. 44 91 IPR000315 GO:0008270
Trre5g05093 284 CDD Bbox1_BBX-like 5 48 - -
Trre5g05093 284 ProSiteProfiles Zinc finger B-box type profile. 1 48 IPR000315 GO:0008270
Trre5g05093 284 Pfam CCT motif 226 268 IPR010402 GO:0005515
Trre5g05093 284 Pfam B-box zinc finger 4 47 IPR000315 GO:0008270
Trre5g05093 284 Pfam B-box zinc finger 46 91 IPR000315 GO:0008270
Trre5g05093 284 ProSiteProfiles CCT domain profile. 226 268 IPR010402 GO:0005515
Trre5g05093 284 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 6 271 IPR045281 GO:0009909
Trre5g05093 284 CDD Bbox1_BBX-like 48 91 - -
Trre5g05093 284 SMART bboxneu5 49 91 IPR000315 GO:0008270
Trre5g05093 284 SMART bboxneu5 1 48 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05093 Trre-Chr5 52274147 52275097 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05093 1 283 C2C2-CO-like Transcription Factor Family AT5G24930 49.311 2.00e-93 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Trre5g05093 zf-B_box 1.8e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05093 - - gmx:100804201 400.593
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05093 5 52274147 52275097 Trre5g05093 5 52274147 52275097 ECH