Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05089 ATGATAAAAATGCATAATCCAATTAGCTTTGTTTATTTTGTGATATTCATGGTTATTTGTTTGTGTGTAAATGATGGAATATTGGCACAAAGAAATGAGACAGTGGTGGTGAAAGTTGGAGCTGTACTTGATGTTAGCAATGGAACTAATGGTGTTGGGATAATAGGATTGAGCTGCATCAAGATGGCTCTCAAAGATTTTTATGACTCTCATTCTCATTACAAAACTAGAATCCAAATCATTCTCAGAGATTCTCATAAGGATGTTGTCACTGCTGCTGCACATGCTTTGGATCTTATAAAAAATGAGAAAGTGCAAGCAATCATGGGACCAACAACAACAATGGAAGCAAATTTTATAATTCAACTAGGAGATAAAGCACACATACCCATTGTAACCTTTTCAGCAACAAGCCCTTCATTAGCATCACTTCAAAGTCCATACTTTTTTCAAATATCACAAACCGATTCAGCTCAAGTAAAAGCCATCACCTCAATTATCCTAGCTTTTGGTTGGAAACAAGTTGTTCCCATTTACATAGACAATAGTTTTGGTGAAGGACTCATACCTTATTTAACCAATGTTCTTCAACAAGCCAATATCCAAATTCCTTATCTAAGTGCAATTTCTCTCTCAGCCACAGATGATGCTATCACTCAAGAGCTTTATAAAATAATGACTACTATATCCACTAGAGTATTTGTTGTGCATATGTCAACAAATCTCGGGTCTAAACTTTTTACCTTAGCAAAAAAAATTGGAATGATGAGACAAGGCTATGTTTGGATAGTAACTGATAGTATGGCTAATTTATTCAATTCATTTGATTTTAATGTGAAGGAATCAATGGAAGGAGTATTGGGTGTTAGGACTTATATTCCAAAAACAAATAAGCTAGATGATTTTAGAGTTAGATGGAAAAGAAAATTCATAAGTGACAATCCGACACTTGTTGACACAAATTTGAATATTTTTGGAATATGGGCTTATGATGCTACAATTGCATTAGCAATGGCTATTGAGAAGGTTGGAATTGGAAACACAAACTTTGGCTACAATGAGAGCAACACATCAAGCAATTATTATATACCAAATTTTGAAAAGTTTGGCATTGCACAAAATGGTGAGAAATTGAGTGAAGCCATGTCAAACACTAAGTTTAATGGTCTTAGTGGTGATTTCAATGTTGTTGGTGGGAAGTTACAAGCATCAATATTTGAGATAATTAATATGATTGGTGATGGAGAAAAAAGGGTTGGATTTTGGACACCTAATAAAGGGTTGACTAGAAATTTGGACTCAAAAGGCCTCATGAGCAATAATAGCACATATTCTAGTTCTAAAGATGATCTTGGATCAATCATATGGCCAGGGGATATAAACTCTATTCCAAAGGGATGGGAAATTCCAACTGTTGGGAAGAAACTGAAGATAGGAGTTCCAGCTAAAGTTGGAGACAACTACACTGAATTTTTGAAAATAACTTATGACTATAGTACCAATAAAGCACAAGTCACTGGATTCTGCGTTGATGTCTTCAAAGCTGTCTTGGATATTTTGCCTTATGACTTACCATATGAATTTATTCCATATGCAAAGCCTAATGGTGAGATGGCAGGAAGCTACAATGACTTGATCGCTCAAATTTATTATGAGAACTATGATGCAGTGGTGGGGGATGTAACAATAACTGCAAACAGATCAGAATATGCTGATTTTACAATGCCATTCACAGAATCTGGTGTAACAATGATTGTTTCAATGAAAGACAGTAGAAAGAAAAATGCATGGACTTTTTTGAAGCCACTGACATGGGATCTTTGGATAGCATCAGCTTGCTCATTTGTATTCATTGGATTTGTTGTATGGATACTTGAACATAGAATAAACAACGACTTCAGAGGATCACCCTCTCATCAGATTGGCACAACCTTATGGTTTTCCTTCTCAACTATGGTCTATGCTCATAGAGAGAAAGTGGTGAGCAACTTGGCTAGATTTGTGGTGGTAGTATGGTTTTTTGTGGTTCTAATTCTGGTTCAAAGTTACACTGCAAGTTTGACTTCCCTCCTAACAGTTGAACAACTAAGGCCAGCTATTACAGATGTTAACCAACTTCTAAAGAATAAGATGAATGTTGGCTATGCCAAGGGTTCTTTTGTTTATGGAATTTTGAAGAACTTGGGTTTCCCAGATTCTCAGCTCATTATTTATCAATCACCTGAAGAATGTAACGAGCTTTTCATTAAAGGAAGTGTAAATGGTGGCATTGATGCTGCTTTTGAGGAAGTTCCCTATGTTAAGCACTTTCTTGGAATGTATAGTTGTTCAAAGTATGTCATGGTTGAACCAAGATTTAAAACGGGTGGTTTTGGCTTTGCTTTTCCAAAAGGCTCGCCTCTTGTGGCTGACATTTCAAGGGCAATCCTAAATGTGACTCAAGGAGACAAAATGAAAACAATTGAGAAGACATGGTTCAAGGAAGCTATTTGTCTAGATTCTAATACAAAAATTTCCTCTAATAACAATCTTGGACTTGAAAGCTTTTGGGGGTTGTTTCTCATTGCAGGCGTTTCTTCTCTATTAGCACTCCTAATCTTTGTGATAACATTCATATGTCAGAACAAACATATTTTGTTAAACAATGATCCAAATACTTCAGTATGGCAACGAGTTTGTATCTTGATTAGGATATTTGATCAAAGAGACTCAAACTGTCACACATTTAAGAAAAGTGTAAATGAAATTAAAAGCACTAATAGTCGTCATCAACATAATGATGACGATTTAGGTGGATTTGAGACATCTCTAGGTACACATTGTCCTCCTAGTCCATCTAGTCAAACTAAATCAAATATTTCGGTTTATAGCGATTTTAGTCCAGACATAGAAATGGATGTTGTACAAATTACTAATCAAGAAGTTTCTTTTGTTTAA 2937 0.3538 MIKMHNPISFVYFVIFMVICLCVNDGILAQRNETVVVKVGAVLDVSNGTNGVGIIGLSCIKMALKDFYDSHSHYKTRIQIILRDSHKDVVTAAAHALDLIKNEKVQAIMGPTTTMEANFIIQLGDKAHIPIVTFSATSPSLASLQSPYFFQISQTDSAQVKAITSIILAFGWKQVVPIYIDNSFGEGLIPYLTNVLQQANIQIPYLSAISLSATDDAITQELYKIMTTISTRVFVVHMSTNLGSKLFTLAKKIGMMRQGYVWIVTDSMANLFNSFDFNVKESMEGVLGVRTYIPKTNKLDDFRVRWKRKFISDNPTLVDTNLNIFGIWAYDATIALAMAIEKVGIGNTNFGYNESNTSSNYYIPNFEKFGIAQNGEKLSEAMSNTKFNGLSGDFNVVGGKLQASIFEIINMIGDGEKRVGFWTPNKGLTRNLDSKGLMSNNSTYSSSKDDLGSIIWPGDINSIPKGWEIPTVGKKLKIGVPAKVGDNYTEFLKITYDYSTNKAQVTGFCVDVFKAVLDILPYDLPYEFIPYAKPNGEMAGSYNDLIAQIYYENYDAVVGDVTITANRSEYADFTMPFTESGVTMIVSMKDSRKKNAWTFLKPLTWDLWIASACSFVFIGFVVWILEHRINNDFRGSPSHQIGTTLWFSFSTMVYAHREKVVSNLARFVVVVWFFVVLILVQSYTASLTSLLTVEQLRPAITDVNQLLKNKMNVGYAKGSFVYGILKNLGFPDSQLIIYQSPEECNELFIKGSVNGGIDAAFEEVPYVKHFLGMYSCSKYVMVEPRFKTGGFGFAFPKGSPLVADISRAILNVTQGDKMKTIEKTWFKEAICLDSNTKISSNNNLGLESFWGLFLIAGVSSLLALLIFVITFICQNKHILLNNDPNTSVWQRVCILIRIFDQRDSNCHTFKKSVNEIKSTNSRHQHNDDDLGGFETSLGTHCPPSPSSQTKSNISVYSDFSPDIEMDVVQITNQEVSFV 978
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05089 978 Pfam Bacterial extracellular solute-binding proteins, family 3 496 827 IPR001638 -
Trre5g05089 978 PIRSF IGluLR_plant 5 955 IPR017103 -
Trre5g05089 978 Pfam Receptor family ligand binding region 59 413 IPR001828 -
Trre5g05089 978 CDD PBP1_GABAb_receptor_plant 38 432 IPR044440 -
Trre5g05089 978 Gene3D - 596 724 - -
Trre5g05089 978 FunFam Glutamate receptor 596 726 - -
Trre5g05089 978 Pfam Ligand-gated ion channel 828 858 IPR001320 GO:0015276|GO:0016020
Trre5g05089 978 SUPERFAMILY Periplasmic binding protein-like II 454 828 - -
Trre5g05089 978 FunFam Glutamate receptor 371 474 - -
Trre5g05089 978 FunFam Glutamate receptor 2.7 733 833 - -
Trre5g05089 978 Gene3D - 365 476 - -
Trre5g05089 978 SMART GluR_14 477 828 IPR001320 GO:0015276|GO:0016020
Trre5g05089 978 Gene3D - 743 833 - -
Trre5g05089 978 Gene3D - 165 343 - -
Trre5g05089 978 FunFam Glutamate receptor 155 311 - -
Trre5g05089 978 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 37 914 IPR015683 -
Trre5g05089 978 CDD GluR_Plant 474 826 - -
Trre5g05089 978 Gene3D - 33 164 - -
Trre5g05089 978 Gene3D - 477 595 - -
Trre5g05089 978 FunFam Glutamate receptor 475 596 - -
Trre5g05089 978 SUPERFAMILY Periplasmic binding protein-like I 36 468 IPR028082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05089 Trre-Chr5 52227586 52231958 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05089 2 947 Ion Channels AT2G29120 48.109 0.0 863
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05089 K05387 - tcc:18587654 1100.89