Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05088 ATGTTAGGTGGAATGGCACAAACTAGGAATGAGAGTAGTGTTGTAGTCAAAGTTGGAGCTGTACTTGATGTTAGCAATGGAACGGTTGGGAGAATAGGATTGAGCTGCATTAACATGGCCCTTACAGATTTCTATGAATCTCATTCTCATTACAAAACTAGAATCCAAGTCATCCTCAGGGACTCTAATAAGGACGTCGTCACTGCCGCCGCACACGCTGTGGATCTCATAAAAAATGATCAAGTGCAAGCAATCATGGGACCAATAACAACAATGGAAGCAAATTTCGTGATTCAACTAGGAGACAAAAAACATATACCCATTGTAACCTTTTCAGCAACACAAGCCCTTCACTAG 357 0.4146 MLGGMAQTRNESSVVVKVGAVLDVSNGTVGRIGLSCINMALTDFYESHSHYKTRIQVILRDSNKDVVTAAAHAVDLIKNDQVQAIMGPITTMEANFVIQLGDKKHIPIVTFSATQALH 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05088 118 Pfam Receptor family ligand binding region 36 115 IPR001828 -
Trre5g05088 118 PANTHER OS06G0188250 PROTEIN 5 115 - -
Trre5g05088 118 SUPERFAMILY Periplasmic binding protein-like I 16 115 IPR028082 -
Trre5g05088 118 Gene3D - 4 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05088 Trre-Chr5 52215547 52220330 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05088 16 117 Ion Channels AT2G29110 51.961 2.35e-31 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05088 K05387 - lja:Lj1g3v1798780.1 147.517