Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05087 ATGATGGGTCAAGGCTATGTTTGGATAGTAACCGATAGTATGGGCAACTTATTGAATTCATTAGATTTTAATGTGAAGGAATCAATGGAAGGAATATTGGCTATTAGGACTTATATTCCAAAAACAAAAAAACTAGATGATTTTAGAGCTAGATGGAAAATGAAATTCCTAAGTGACAATCCAACGCTTTATGACACAAATTTGAACATTTTTGGAATATGGGCTTATGATGCTACAATTGCATTAACAATGGCTATTGAGAAGGTTGGAAGGTCGAACACAAAATTTGGTATTGTGCAAAGTGGTGAGAAGTTGAGTGAAGCTTTGTCAAACACTAGATTTAATGGTCTTAGTGGTGATTTCAATGTAGTTGATGGGAAGTTACAAACACATATACTTGAGATAATTAATGTGATTGGTGAAGGAGAAAAAAGGGTTGGATTTTGGACACCAAATAAAGGGTTGGCTAGAAATTTGGACACAAAAGGCCTAAAAAACAATAATAGCATATATTCTAGTTCTCAAAATGATATTGGATCAATCATGTGGCCAGGGGATGTGTACTCTATTCCAAAGGGATGGGAAATTCCATCTACGGGGAAGAAGTTAAGGATAGGAGTTCCAATTAAAAATGGAGATCATTATACTGAATTATTGAGAGTAACATATGATCATAATACCAATAAAACACAAGCCACTGGCTTCTGCATTGATGTCTTCAAAGCTGTGGTGGATGTTTTGCCTTATGCCTTACCATATGAATTTTTTCCATATATAAAGCCTGATGGTGAGATGGCAGGAAGCTACAATGACTTGATCGCTCAAATTTATTATGGGAACTATGATGCAGTAGTGGGGGATGTAACAATCATTGCAAACAGATCAAAATATGTTGATTTTACAATGCCATTCACAGAATCTGGTGTAACAATGGTTGTTTCAATGAAAGACAACATGAAAAATGCATGGGCTTTTTTGAAGCCACTAACATGGGATCTTTGGGTAGCATCAGCTTGTTCATTTGTATTCATCGGATTTGTTGTATGGGTCCTTGAACATAGAATAAATAACGATTTCAGGGGACCACCCTCTCATCAAATTGGCACAAGCTTATGGTTTTCCTTCTCAACTATGGTCTATGCTCATAGAGAGAGAGTGGTGAGCAACTTGGGTAGATTTGTGGTGGTTGTATGGTTTTTTGTGGTTCTAATTCTAGTTCAAAGTTACACTGCAAGTTTGACTTCACTTTTAACGGTTGAAAAATTATGGCCATCTATTACAGATGTTAACCAACTTCTAAAGAATAATATGAATGTTGGCTATCTCAAAGGTTCTTATGTTTATGGAATTCTGAAGAACTTAGGTTTCTCAGATTCTCAACTCATTGCTTATGAATCACCAAAAGAATGTCATGAGCTTTTCATACAAAGAAGTGTAAATGGTGGCATTGATGCCGCTTTTGATGAAGTTCCATATGTTCAGAACTTTCTTCAGAAGTATAGTTGTTCAACTTCAAAGTATGTCATGGTTGAACCAAGATTTAAAACTGGTGGTTTTGGCTATGCGTTTCCAAAAGGTTCACCTCTTGTAGCTGACATTTCAAGGGCAATCTTAAATGTGACTCAAGGAGGCAGAATGAGAACAATTGAGAATGCATGGCTCAAAGAACCTAGTTGCTTAGATTCTAATACAAAAATTTCTTCTAATAACCATCTTGGACTTGAAAGCTTTTGGGGACTATTTCTCATCGCAGGGATTGCTTCCCTATTAGCACTCCTAATCTTTTTGGTGAACTTCCTATATCAGCATAAACACATTTGGTTACACAATAATTTAAGTATTTCATTATGGCAAAGAATTTGTGTCTTGGTAAGGATATTTGATCAAAGAGATTTGAACCGTCACGCATTCAAGAAAAGTGAAAATCAAAATGAAAGCAGTGACAATCCTCGTCATGATGATTTATGTGCAGTTGAGGCATCTCCATGTACACATTGTCCTCCTAGTCCATCTAGTCAAACTGAATCAAATGTTTTGGTTTATGGCGATTTGAGTCCAAATACAGAAATAAATGTTGTGCAAATTACTAATCAAGAAGTTGCTCCTGTGAACAACTGTGAAATGAACTCCCAAGAAACATGA 2142 0.3595 MMGQGYVWIVTDSMGNLLNSLDFNVKESMEGILAIRTYIPKTKKLDDFRARWKMKFLSDNPTLYDTNLNIFGIWAYDATIALTMAIEKVGRSNTKFGIVQSGEKLSEALSNTRFNGLSGDFNVVDGKLQTHILEIINVIGEGEKRVGFWTPNKGLARNLDTKGLKNNNSIYSSSQNDIGSIMWPGDVYSIPKGWEIPSTGKKLRIGVPIKNGDHYTELLRVTYDHNTNKTQATGFCIDVFKAVVDVLPYALPYEFFPYIKPDGEMAGSYNDLIAQIYYGNYDAVVGDVTIIANRSKYVDFTMPFTESGVTMVVSMKDNMKNAWAFLKPLTWDLWVASACSFVFIGFVVWVLEHRINNDFRGPPSHQIGTSLWFSFSTMVYAHRERVVSNLGRFVVVVWFFVVLILVQSYTASLTSLLTVEKLWPSITDVNQLLKNNMNVGYLKGSYVYGILKNLGFSDSQLIAYESPKECHELFIQRSVNGGIDAAFDEVPYVQNFLQKYSCSTSKYVMVEPRFKTGGFGYAFPKGSPLVADISRAILNVTQGGRMRTIENAWLKEPSCLDSNTKISSNNHLGLESFWGLFLIAGIASLLALLIFLVNFLYQHKHIWLHNNLSISLWQRICVLVRIFDQRDLNRHAFKKSENQNESSDNPRHDDLCAVEASPCTHCPPSPSSQTESNVLVYGDLSPNTEINVVQITNQEVAPVNNCEMNSQET 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05087 713 SMART GluR_14 202 556 IPR001320 GO:0015276|GO:0016020
Trre5g05087 713 Pfam Bacterial extracellular solute-binding proteins, family 3 229 555 IPR001638 -
Trre5g05087 713 SUPERFAMILY Periplasmic binding protein-like I 1 195 IPR028082 -
Trre5g05087 713 Pfam Receptor family ligand binding region 1 139 IPR001828 -
Trre5g05087 713 Gene3D - 453 561 - -
Trre5g05087 713 Gene3D - 1 68 - -
Trre5g05087 713 Gene3D - 204 322 - -
Trre5g05087 713 SUPERFAMILY Voltage-gated potassium channels 330 417 - -
Trre5g05087 713 CDD GluR_Plant 201 554 - -
Trre5g05087 713 FunFam Glutamate receptor 322 452 - -
Trre5g05087 713 SUPERFAMILY Periplasmic binding protein-like II 181 557 - -
Trre5g05087 713 Gene3D - 323 452 - -
Trre5g05087 713 FunFam Glutamate receptor 202 323 - -
Trre5g05087 713 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 1 641 IPR015683 -
Trre5g05087 713 Gene3D - 98 203 - -
Trre5g05087 713 Pfam Ligand-gated ion channel 556 587 IPR001320 GO:0015276|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05087 Trre-Chr5 52211133 52215208 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05087 1 675 Ion Channels AT2G29120 48.773 0.0 640
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05087 K05387 - tcc:18587655 779.245