Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05086 ATGGTGAAGATGGATAATTCCTCAATTATGATATTCATGGCTATAACTTGTATCTTTGTAAATATGTTGGGTGGAATGGCACAAACTAGAAACAACGAGAGTAGTATTGTAGTGAAAGTTGGAGTTGTACTTGATGTTAGCGAAGGTACGTTTGGGAAGATAGGTTTGAGCTGCATCAACATGGCACTCTCAGATTTCTATGACTCTCATTCTCATCGCAAAACCAGAATCCAAACCATCGTCAGAGATTCTCACAAGGACGTTGTTACTGCCGCCGCACACACTTGGGATCTCATAAAAAATGAGGAAGTGCAAGCCATCATGGGACCAAGAACAACAATGGAAGCAAATTTTGTGATTCAACTAGGAGACAAAGCACATGTCCCCATTGTAACCTTTTCAGCAACAAGCCCTTCATTAGCATCACTTCAAAGTCCATACTTTTTTCAAATATCACAAACTGATTCAGCTCAAGTAAAAGTCATCACATCAATTATCCTAGCTTTTGGTTGGAAACAAGTGGTCCCCATTTACATAGATAATAGTTTTGGTGAAGGACTCATACCTTATTTAACCAATGTTCTTCAACAAGCTTATATCCAAGTTCCTTATCTAAGTGCAATTTCTCTTTTAGCCACAGATGATGACATCATTCAAGAGCTTTATAAAATAATGACTACTATATCCACTAGAGTATTTATTGTGCACATGTCACCAAACCTTGGGTCTAAACTTTTTCCCTTAGCAAAAAAAATTGGGATGATGAGTGAAGGTTATGTTTGGATAGTAACCGATAGTATGACTAATTTATTCAATTCATTGGATTTTAATGTGAGGGAATCAATGGAAGGAGTATTGGGTGTTAGGACTTATATTCCAAAAACAAATAAGCTAGAAGATTTTAGAGTTAGATGGAAAAGAAAATTCATAAGTGACAATCCAACACTTGTTGATATAAATTTGAACATTTTTGGAATATGGGCTTATGATGCTACAATTGCATTAGCAATGGCTATTGAGAAGGTTGGAATTGGAAACACAAAATTTGGCTACAATGAGAGCAACACATCAAGCAATATGCCAAATTTTGAAAAGTTAGGTATTACACAAAATGGTGAAAAATTGAGTGAAGCTTTATCAAATACTAGCTTTAATGGTCTTAGTGGTGATTTCAATGTTGTTAATGGGAAATTACAAGCATCAATATTTGAGATAATTAATGTGATTGGTGATGGAGGAAAAAGGGTTGGATTTTGGACACCAAAAAAAGGGTTGGCTAGAAATTTGGACACAAAAAGCCTAATGAGCAATCATAACATATATTCTAGTTCTAAAGATGATCTTGGATCAATCATATGGCCAGGGGATATAAACTCTATTCCAAAGGGATGGGAAATTCCATCTATTGGGAAGAAATTGCGGATAGGCGTTCCCGTTAAAAGTGGAGATAACTACACTGAATTCTTGAAAGTAACATATGATAATAGTGCCAATAAAACAGATACTACAGGATTCTGCATTGATGTCTTCAAAGCTGTGGTGGATGTTTTGCCTTATGACTTACCATATGAATTGATTCCATATGCAAACCATGAGGGTCAGATGGCAGGAACATACGATGAGTTGATCTCTCAACTTTATCATGGGAAGTATGATGCAATAGTAGGGGATGTAACAATCATTGCAAATAGATCAGAATATGTTGATTTCACAATGCCATACACAGAATCTGGTGTGACAATGGTTGTTTCAATGAAAGACAACGGGAAGAAAAATGCATGGGCTTTTTTGAAGCCATTGACATGGCATCTTTGGGTAACATCAGCTTGTTCATTTGTATTCATTGGATTTGTTGTATGGATACTTGAACATAGAATAAACAACGATTTCAGGGGACCACCCTCTCATCAGATTGGCACAAGCTTGTGGTTTTCATTCTCAACTATGGTTTATGCTCACAGAGAGAAAGTGGTGAGCAACTTGGCTAGATTTGTGGTGGTTGTATGGCTTTTTGTGGTTCTAATTTTGGTTCAAAGTTACACTGCAAGCTTGACTTCACTCTTAACAGTTGAACAACTAAGGCCAACTGTTACAGATGTTAACCAACTTCTAAAGAATAAGATGAATGTTGGCTATCTCAAAGGTTCTTTTGTTAAAGGAATTTTGAAGAACTTGGGTTTCCCAGACTCTAAGCTAATTACTTATCAATCACCAGAAGAATGTCATGAGCTTTTCCTAAAAGGAAGTGTAAATGGTGGCATTGATGCTGCTTTTGATGAAATTCCATATGTTAAGCACTTCCTTGGAACTTATAGTTGTTCAAAGTATGTCATGGTTGAACCAAGATTTAAAGCCGGTGGTTTTGGCTATGCTTTTCCAAAAGGTTCACCACTTGTGGCTGACATTTCAAGGGCAATCCTAAATGTGACTCAAGGAGACAAAATGAGAACAATTGAGAATGCATGGTTCAAGGAAGCTATTTGTCTAGATTCTAGTACAGAAATTTCCTCTAATAACAATCTTGGACTTGAAAGCTTTTGGGGTCTATTTCTCATTGCATGGATTGCTTCCCTAGTAGCACTCCTAATCTTTGTGGTAACATTCCTATATCAGCACAAACATATTTGGTTAAACAATGATCAAAATACTTCAATATGGCGACGAGTTTGCATCTTGGTTAGGATATTTGATCAAAGAGACTCGAACTCTCACACATTCAAAAAAAGTGAAAACAAAATTAAAAGCAGTAATAGTCCTCATGATGATGATGATGATATAGGTGCAGTTGAGGCATCTCCAGGTACACATTGTCCTCCTAGTCCATCTAGTCAAACTGAATCAAATGTTTCGTTTTATGGCGATTTTAGTTCAAACACAGAAATGGATCCTGTGAACAACTGTGAAATTAACTCCCAAGCAACAGCCAACATGACCTCATCTACATTTGTAACATCCAGCTCATAA 2964 0.3657 MVKMDNSSIMIFMAITCIFVNMLGGMAQTRNNESSIVVKVGVVLDVSEGTFGKIGLSCINMALSDFYDSHSHRKTRIQTIVRDSHKDVVTAAAHTWDLIKNEEVQAIMGPRTTMEANFVIQLGDKAHVPIVTFSATSPSLASLQSPYFFQISQTDSAQVKVITSIILAFGWKQVVPIYIDNSFGEGLIPYLTNVLQQAYIQVPYLSAISLLATDDDIIQELYKIMTTISTRVFIVHMSPNLGSKLFPLAKKIGMMSEGYVWIVTDSMTNLFNSLDFNVRESMEGVLGVRTYIPKTNKLEDFRVRWKRKFISDNPTLVDINLNIFGIWAYDATIALAMAIEKVGIGNTKFGYNESNTSSNMPNFEKLGITQNGEKLSEALSNTSFNGLSGDFNVVNGKLQASIFEIINVIGDGGKRVGFWTPKKGLARNLDTKSLMSNHNIYSSSKDDLGSIIWPGDINSIPKGWEIPSIGKKLRIGVPVKSGDNYTEFLKVTYDNSANKTDTTGFCIDVFKAVVDVLPYDLPYELIPYANHEGQMAGTYDELISQLYHGKYDAIVGDVTIIANRSEYVDFTMPYTESGVTMVVSMKDNGKKNAWAFLKPLTWHLWVTSACSFVFIGFVVWILEHRINNDFRGPPSHQIGTSLWFSFSTMVYAHREKVVSNLARFVVVVWLFVVLILVQSYTASLTSLLTVEQLRPTVTDVNQLLKNKMNVGYLKGSFVKGILKNLGFPDSKLITYQSPEECHELFLKGSVNGGIDAAFDEIPYVKHFLGTYSCSKYVMVEPRFKAGGFGYAFPKGSPLVADISRAILNVTQGDKMRTIENAWFKEAICLDSSTEISSNNNLGLESFWGLFLIAWIASLVALLIFVVTFLYQHKHIWLNNDQNTSIWRRVCILVRIFDQRDSNSHTFKKSENKIKSSNSPHDDDDDIGAVEASPGTHCPPSPSSQTESNVSFYGDFSSNTEMDPVNNCEINSQATANMTSSTFVTSSS 987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05086 987 MobiDBLite consensus disorder prediction 907 929 - -
Trre5g05086 987 CDD PBP1_GABAb_receptor_plant 50 429 IPR044440 -
Trre5g05086 987 FunFam Glutamate receptor 468 593 - -
Trre5g05086 987 Gene3D - 594 723 - -
Trre5g05086 987 Gene3D - 728 830 - -
Trre5g05086 987 Pfam Receptor family ligand binding region 58 410 IPR001828 -
Trre5g05086 987 FunFam Glutamate receptor 154 310 - -
Trre5g05086 987 FunFam Glutamate receptor 2.7 730 830 - -
Trre5g05086 987 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 38 907 IPR015683 -
Trre5g05086 987 Gene3D - 352 472 - -
Trre5g05086 987 MobiDBLite consensus disorder prediction 936 957 - -
Trre5g05086 987 SMART GluR_14 474 825 IPR001320 GO:0015276|GO:0016020
Trre5g05086 987 SUPERFAMILY Periplasmic binding protein-like II 451 825 - -
Trre5g05086 987 MobiDBLite consensus disorder prediction 907 957 - -
Trre5g05086 987 FunFam Glutamate receptor 593 723 - -
Trre5g05086 987 CDD GluR_Plant 471 823 - -
Trre5g05086 987 Gene3D - 473 593 - -
Trre5g05086 987 SUPERFAMILY Periplasmic binding protein-like I 37 465 IPR028082 -
Trre5g05086 987 FunFam Glutamate receptor 368 471 - -
Trre5g05086 987 Gene3D - 35 160 - -
Trre5g05086 987 PIRSF IGluLR_plant 6 961 IPR017103 -
Trre5g05086 987 SUPERFAMILY Voltage-gated potassium channels 603 694 - -
Trre5g05086 987 Gene3D - 161 320 - -
Trre5g05086 987 Pfam Bacterial extracellular solute-binding proteins, family 3 499 824 IPR001638 -
Trre5g05086 987 Pfam Ligand-gated ion channel 825 856 IPR001320 GO:0015276|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05086 Trre-Chr5 52198750 52203838 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05086 3 946 Ion Channels AT2G29120 49.947 0.0 899
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05086 K05387 - tcc:18587654 1137.09