Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05075 ATGGATAATCAAGTCACCACTCATCAAATTAAAACTTCATCATCATCTTCAACAATAAATGGTAATAATAATGATGATGATAAGAAAAACAAGAAGATGTACAAAGGAGTAAGATTGAGAAAGTGGGGAAAATGGGTGTCTGAAATAAGACTACCAAATAGTCGTGATCGAATATGGTTAGGATCATATGATTCAGCTGAAAAAGCAGCTAGAGCATTTGATGCTGCACTTTTTTGTCTCCGTGGTCCTAATGCTACTTTCAATTTCCCTGATACACCTCATAATATCAATGTTGTTACTAGTAACAACATTTCTCTTACTCCACAAGAGATTAGAGAAGTTGCTGCTAATTTTGCCAACAAAAATCAACCAATTATTATTGATAATAATAATAACAATATTAATATTAATAATAATGGTAATGGTAATGTTGTTGATCAATCCAACATTGTGAAGGAAATTAGTGGCTCTTCATCTTCTACTATGTATGACAATGGGAACATGATTGATTGGACATTTTTGAACATGTTGGATGGTTCAAGTGATGTTGGAACTGAAAATTATGGTGGTTTCTATTCCGACTTAGAAAAGATGCATTCCGGCGAGTTATTGTATTCCATTCCACCACCGCTTTTTGAGGATTATAATCATCAGAATGAAATCGTTGATGATGATAATGACGATCCTTTTTCTCATCCAGCATTTCTCTGGAGCTGGAATTTTTAA 726 0.3347 MDNQVTTHQIKTSSSSSTINGNNNDDDKKNKKMYKGVRLRKWGKWVSEIRLPNSRDRIWLGSYDSAEKAARAFDAALFCLRGPNATFNFPDTPHNINVVTSNNISLTPQEIREVAANFANKNQPIIIDNNNNNININNNGNGNVVDQSNIVKEISGSSSSTMYDNGNMIDWTFLNMLDGSSDVGTENYGGFYSDLEKMHSGELLYSIPPPLFEDYNHQNEIVDDDNDDPFSHPAFLWSWNF 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05075 241 CDD AP2 34 92 IPR001471 GO:0003700|GO:0006355
Trre5g05075 241 Gene3D AP2/ERF domain 32 91 IPR036955 GO:0003700|GO:0006355
Trre5g05075 241 ProSiteProfiles AP2/ERF domain profile. 33 90 IPR001471 GO:0003700|GO:0006355
Trre5g05075 241 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 14 157 - -
Trre5g05075 241 MobiDBLite consensus disorder prediction 1 32 - -
Trre5g05075 241 Pfam AP2 domain 34 82 IPR001471 GO:0003700|GO:0006355
Trre5g05075 241 SUPERFAMILY DNA-binding domain 33 91 IPR016177 GO:0003677
Trre5g05075 241 MobiDBLite consensus disorder prediction 1 23 - -
Trre5g05075 241 PRINTS Ethylene responsive element binding protein signature 34 45 IPR001471 GO:0003700|GO:0006355
Trre5g05075 241 PRINTS Ethylene responsive element binding protein signature 56 72 IPR001471 GO:0003700|GO:0006355
Trre5g05075 241 FunFam Ethylene-responsive transcription factor 2 32 91 - -
Trre5g05075 241 SMART rav1_2 33 96 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05075 Trre-Chr5 52133315 52134040 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05075 23 219 AP2-EREBP Transcription Factor Family AT1G74930 44.059 2.05e-42 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre5g05075 AP2 5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05075 - - mtr:11432431 275.018
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05075 5 52133315 52134040 Trre5g05075 5 52133315 52134040 ECH