Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre5g05072 | ATGGCGGATGTGATGGTAATGAAAGAGATTGAAGACAAAGCCTCTCTTCTTGGAATCGATCTATCTACCATTGATCTTGATTCCATTAAACTCCCACCGGGTGATGACTGTGGAATCATCAGTGATGATGAGGATGTTCTTCGAGAGGAAAATTCTGGTTCGTTTGATACTGGTTTTGGGAATATTATAGTAGTGGACAATCTTCCCGTTGTTCCGAAGGAAAAATTTGAGAAACTTGAAGGTGTTGTTCGTAAAATTTGCGGTCAGATTGGTGTTATTAAGGATGATGGTCTTTGGATGCCAGTTGATTCTGCTGGAAAGACCTTAGGCTACTGCTTTATTGAGTACAATACTCCACAGGAAGCTGAGATTGCTAGAGAGAAGACTCATGGATACAAATTGGATCGTTCCCACATATTTGCTGTGAGTATGTTTGATGATTTTGACCGGTTCATGAATGTGCCGGATGAGTGGGCTCCTCCTCCAAACAAGGAATATACTCCAGGGGAAAATCTCCAACAGTGGCTTACTGATGCTAAGGCCCGAGACCAGTTTGTGATTCGTGCTGCTAATGATCGTACTGGTAATGATACTGAGGTTTTTTGGAATGATGCTAGACATTTAAAACCCGATCCTGTTTACAAACGTGCATACTGGACCGATAGTTTTGTACATTGGTCACCCTTGGGCACATATTTGGCAACAGTTCACCGGCAGGGTGCAGCAGTCTGGGGAGGTGCTACAACCTTCAATCGTCTCATGCGATATGCTCATCCTCAGGTAAAGCTTATTGATTTTTCACCTGGTGAGAAGTATTTGGTAACTTATAGTAGCCATGAACCAAGCAACCCTCGAGATGCTAATAGGGTTGTGATAAATATATTTGATGTGAGGACTGGTAAAGTGATGAGAGACTTTAAAGGAAGTGCTGATGATTTTGCTATTGGAGGCACCGTGGGTGTCATGGGAGTGTCATGGCCTGTTTTCAAATGGAGTGGCGGAAGAGATGACAAGTACTTTGCTAGGATGGGGAAAAATGTACTTTCTGTATATGAGACAGAAAGATTCTCTCTTGTTGACAAAAAATCCATTAAGGTTGAAAATATAATGGATTTCAGCTGGTCACCAACTGATCCAATCATTTCACTCTTTGTTCCCGAGTCAGGAGGTGGTAACCAGCCAGCTAGGGTTAGTCTTGTTCAAATCCCCAGCAAAGAAGAACTCAGGCAAAAGAACCTTTTTAGTGTCAGTGACTGCAAGATGTACTGGCAGAGCAATGGGGATTACCTTGCTGTTAATGTAGATCGATATACCAAAACAAAGAAAAGTACTTACACAGGCTTTGAGCTTTTCCGTATAAAGGAACGCGACATACCCATTGAAGTTCTGGAGCTTGAGAATAAGAATGATAAGATCGTTGCATTTGCTTGGGAGCCAAAGGGACATAGGTTTGCTGTTATTCACGGTGATATGCCAAAGCCTGATATTAGTATATACTCTATGCGGACTGCTCAGAACACTGGCCGAGTTTCAAAGCTCACTACTCTGAAAGGCAAGCAGGCAAATGCTTTGTTTTGGTCACCTGCAGGTCGCTTCATTGTATTTGCAGGGCTGAAAGGTATGAACGGACAGTTGGAATTTTACAATGTTGATGACCTCGAAACCATGAATAATGCTGAACATTTTTGTGCAACTGATGTTGAATGGGATCCAACTGGAAGGTATGTTGCAACTGCAGTGACTTCAGTTCATGATATGGAAAATGGATTCAATATATGGTCTTTCCATGGCAAACATCTCTATCGGATATTGAAGGATAACTTCTATCAGTTCTTATGGAGACCAAGGCCACCATCTTTCTTGACTGCTGAGAAAGAGGAAGAGATTGCAAAGAACTTGAAGAAGTATAGTAAGAAATATGAAGCTGAAGATCAAGATGTTTCATTGCTTCTGAGTGAGCAGGAGCAAGAGAAGCGCAGGCTCGTGAAAGAAGAATGGAACAAATGGGTCAATCAATGGAAGCAGTTGCATGAAGAAGAGAAGGCAAAGAGGCAAGAGCTGAGGGACGGAGAAGCTAGTGACGAGGAAGAAGAATATGAAGCAAAGGACATTGAAGTCGAGGAAGTAGTCAGTGTTTCCAAAGAGATCCTTCAGTCTGAGTTTGGTCAAGAGTGA | 2175 | 0.423 | MADVMVMKEIEDKASLLGIDLSTIDLDSIKLPPGDDCGIISDDEDVLREENSGSFDTGFGNIIVVDNLPVVPKEKFEKLEGVVRKICGQIGVIKDDGLWMPVDSAGKTLGYCFIEYNTPQEAEIAREKTHGYKLDRSHIFAVSMFDDFDRFMNVPDEWAPPPNKEYTPGENLQQWLTDAKARDQFVIRAANDRTGNDTEVFWNDARHLKPDPVYKRAYWTDSFVHWSPLGTYLATVHRQGAAVWGGATTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADDFAIGGTVGVMGVSWPVFKWSGGRDDKYFARMGKNVLSVYETERFSLVDKKSIKVENIMDFSWSPTDPIISLFVPESGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSNGDYLAVNVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIVAFAWEPKGHRFAVIHGDMPKPDISIYSMRTAQNTGRVSKLTTLKGKQANALFWSPAGRFIVFAGLKGMNGQLEFYNVDDLETMNNAEHFCATDVEWDPTGRYVATAVTSVHDMENGFNIWSFHGKHLYRILKDNFYQFLWRPRPPSFLTAEKEEEIAKNLKKYSKKYEAEDQDVSLLLSEQEQEKRRLVKEEWNKWVNQWKQLHEEEKAKRQELRDGEASDEEEEYEAKDIEVEEVVSVSKEILQSEFGQE | 724 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre5g05072 | 724 | Gene3D | - | 404 | 639 | IPR015943 | GO:0005515 | |
Trre5g05072 | 724 | Gene3D | - | 194 | 388 | IPR015943 | GO:0005515 | |
Trre5g05072 | 724 | PIRSF | Transl_init_eIF3b | 6 | 719 | IPR011400 | GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369 | |
Trre5g05072 | 724 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 83 | 137 | IPR000504 | GO:0003723 | |
Trre5g05072 | 724 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED | 27 | 716 | IPR011400 | GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369 | |
Trre5g05072 | 724 | FunFam | Eukaryotic translation initiation factor 3 subunit B | 416 | 631 | - | - | |
Trre5g05072 | 724 | FunFam | Eukaryotic translation initiation factor 3 subunit B | 181 | 387 | - | - | |
Trre5g05072 | 724 | CDD | RRM_eIF3B | 60 | 143 | IPR034363 | - | |
Trre5g05072 | 724 | SUPERFAMILY | DPP6 N-terminal domain-like | 222 | 598 | - | - | |
Trre5g05072 | 724 | SMART | rrm1_1 | 62 | 143 | IPR000504 | GO:0003723 | |
Trre5g05072 | 724 | FunFam | Eukaryotic translation initiation factor 3 subunit B | 56 | 154 | - | - | |
Trre5g05072 | 724 | SUPERFAMILY | RNA-binding domain, RBD | 56 | 141 | IPR035979 | GO:0003676 | |
Trre5g05072 | 724 | Hamap | Eukaryotic translation initiation factor 3 subunit B [EIF3B]. | 55 | 718 | IPR011400 | GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369 | |
Trre5g05072 | 724 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 61 | 147 | IPR000504 | GO:0003723 | |
Trre5g05072 | 724 | Coils | Coil | 623 | 643 | - | - | |
Trre5g05072 | 724 | Gene3D | - | 60 | 143 | IPR012677 | - | |
Trre5g05072 | 724 | MobiDBLite | consensus disorder prediction | 680 | 701 | - | - | |
Trre5g05072 | 724 | Pfam | Eukaryotic translation initiation factor eIF2A | 411 | 611 | IPR013979 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre5g05072 | Trre-Chr5 | 52075293 | 52079093 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre5g05072 | 5 | 718 | Eukaryotic Initiation Factors Gene Family | AT5G27640 | 75.140 | 0.0 | 1139 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre5g05072 | K03253 | - | gmx:100817394 | 1281.54 |