Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05072 ATGGCGGATGTGATGGTAATGAAAGAGATTGAAGACAAAGCCTCTCTTCTTGGAATCGATCTATCTACCATTGATCTTGATTCCATTAAACTCCCACCGGGTGATGACTGTGGAATCATCAGTGATGATGAGGATGTTCTTCGAGAGGAAAATTCTGGTTCGTTTGATACTGGTTTTGGGAATATTATAGTAGTGGACAATCTTCCCGTTGTTCCGAAGGAAAAATTTGAGAAACTTGAAGGTGTTGTTCGTAAAATTTGCGGTCAGATTGGTGTTATTAAGGATGATGGTCTTTGGATGCCAGTTGATTCTGCTGGAAAGACCTTAGGCTACTGCTTTATTGAGTACAATACTCCACAGGAAGCTGAGATTGCTAGAGAGAAGACTCATGGATACAAATTGGATCGTTCCCACATATTTGCTGTGAGTATGTTTGATGATTTTGACCGGTTCATGAATGTGCCGGATGAGTGGGCTCCTCCTCCAAACAAGGAATATACTCCAGGGGAAAATCTCCAACAGTGGCTTACTGATGCTAAGGCCCGAGACCAGTTTGTGATTCGTGCTGCTAATGATCGTACTGGTAATGATACTGAGGTTTTTTGGAATGATGCTAGACATTTAAAACCCGATCCTGTTTACAAACGTGCATACTGGACCGATAGTTTTGTACATTGGTCACCCTTGGGCACATATTTGGCAACAGTTCACCGGCAGGGTGCAGCAGTCTGGGGAGGTGCTACAACCTTCAATCGTCTCATGCGATATGCTCATCCTCAGGTAAAGCTTATTGATTTTTCACCTGGTGAGAAGTATTTGGTAACTTATAGTAGCCATGAACCAAGCAACCCTCGAGATGCTAATAGGGTTGTGATAAATATATTTGATGTGAGGACTGGTAAAGTGATGAGAGACTTTAAAGGAAGTGCTGATGATTTTGCTATTGGAGGCACCGTGGGTGTCATGGGAGTGTCATGGCCTGTTTTCAAATGGAGTGGCGGAAGAGATGACAAGTACTTTGCTAGGATGGGGAAAAATGTACTTTCTGTATATGAGACAGAAAGATTCTCTCTTGTTGACAAAAAATCCATTAAGGTTGAAAATATAATGGATTTCAGCTGGTCACCAACTGATCCAATCATTTCACTCTTTGTTCCCGAGTCAGGAGGTGGTAACCAGCCAGCTAGGGTTAGTCTTGTTCAAATCCCCAGCAAAGAAGAACTCAGGCAAAAGAACCTTTTTAGTGTCAGTGACTGCAAGATGTACTGGCAGAGCAATGGGGATTACCTTGCTGTTAATGTAGATCGATATACCAAAACAAAGAAAAGTACTTACACAGGCTTTGAGCTTTTCCGTATAAAGGAACGCGACATACCCATTGAAGTTCTGGAGCTTGAGAATAAGAATGATAAGATCGTTGCATTTGCTTGGGAGCCAAAGGGACATAGGTTTGCTGTTATTCACGGTGATATGCCAAAGCCTGATATTAGTATATACTCTATGCGGACTGCTCAGAACACTGGCCGAGTTTCAAAGCTCACTACTCTGAAAGGCAAGCAGGCAAATGCTTTGTTTTGGTCACCTGCAGGTCGCTTCATTGTATTTGCAGGGCTGAAAGGTATGAACGGACAGTTGGAATTTTACAATGTTGATGACCTCGAAACCATGAATAATGCTGAACATTTTTGTGCAACTGATGTTGAATGGGATCCAACTGGAAGGTATGTTGCAACTGCAGTGACTTCAGTTCATGATATGGAAAATGGATTCAATATATGGTCTTTCCATGGCAAACATCTCTATCGGATATTGAAGGATAACTTCTATCAGTTCTTATGGAGACCAAGGCCACCATCTTTCTTGACTGCTGAGAAAGAGGAAGAGATTGCAAAGAACTTGAAGAAGTATAGTAAGAAATATGAAGCTGAAGATCAAGATGTTTCATTGCTTCTGAGTGAGCAGGAGCAAGAGAAGCGCAGGCTCGTGAAAGAAGAATGGAACAAATGGGTCAATCAATGGAAGCAGTTGCATGAAGAAGAGAAGGCAAAGAGGCAAGAGCTGAGGGACGGAGAAGCTAGTGACGAGGAAGAAGAATATGAAGCAAAGGACATTGAAGTCGAGGAAGTAGTCAGTGTTTCCAAAGAGATCCTTCAGTCTGAGTTTGGTCAAGAGTGA 2175 0.423 MADVMVMKEIEDKASLLGIDLSTIDLDSIKLPPGDDCGIISDDEDVLREENSGSFDTGFGNIIVVDNLPVVPKEKFEKLEGVVRKICGQIGVIKDDGLWMPVDSAGKTLGYCFIEYNTPQEAEIAREKTHGYKLDRSHIFAVSMFDDFDRFMNVPDEWAPPPNKEYTPGENLQQWLTDAKARDQFVIRAANDRTGNDTEVFWNDARHLKPDPVYKRAYWTDSFVHWSPLGTYLATVHRQGAAVWGGATTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADDFAIGGTVGVMGVSWPVFKWSGGRDDKYFARMGKNVLSVYETERFSLVDKKSIKVENIMDFSWSPTDPIISLFVPESGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSNGDYLAVNVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIVAFAWEPKGHRFAVIHGDMPKPDISIYSMRTAQNTGRVSKLTTLKGKQANALFWSPAGRFIVFAGLKGMNGQLEFYNVDDLETMNNAEHFCATDVEWDPTGRYVATAVTSVHDMENGFNIWSFHGKHLYRILKDNFYQFLWRPRPPSFLTAEKEEEIAKNLKKYSKKYEAEDQDVSLLLSEQEQEKRRLVKEEWNKWVNQWKQLHEEEKAKRQELRDGEASDEEEEYEAKDIEVEEVVSVSKEILQSEFGQE 724
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05072 724 Gene3D - 404 639 IPR015943 GO:0005515
Trre5g05072 724 Gene3D - 194 388 IPR015943 GO:0005515
Trre5g05072 724 PIRSF Transl_init_eIF3b 6 719 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Trre5g05072 724 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 83 137 IPR000504 GO:0003723
Trre5g05072 724 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED 27 716 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Trre5g05072 724 FunFam Eukaryotic translation initiation factor 3 subunit B 416 631 - -
Trre5g05072 724 FunFam Eukaryotic translation initiation factor 3 subunit B 181 387 - -
Trre5g05072 724 CDD RRM_eIF3B 60 143 IPR034363 -
Trre5g05072 724 SUPERFAMILY DPP6 N-terminal domain-like 222 598 - -
Trre5g05072 724 SMART rrm1_1 62 143 IPR000504 GO:0003723
Trre5g05072 724 FunFam Eukaryotic translation initiation factor 3 subunit B 56 154 - -
Trre5g05072 724 SUPERFAMILY RNA-binding domain, RBD 56 141 IPR035979 GO:0003676
Trre5g05072 724 Hamap Eukaryotic translation initiation factor 3 subunit B [EIF3B]. 55 718 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Trre5g05072 724 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 61 147 IPR000504 GO:0003723
Trre5g05072 724 Coils Coil 623 643 - -
Trre5g05072 724 Gene3D - 60 143 IPR012677 -
Trre5g05072 724 MobiDBLite consensus disorder prediction 680 701 - -
Trre5g05072 724 Pfam Eukaryotic translation initiation factor eIF2A 411 611 IPR013979 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Trre5g05072 Trre-Chr5 52075293 52079093 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05072 5 718 Eukaryotic Initiation Factors Gene Family AT5G27640 75.140 0.0 1139
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05072 K03253 - gmx:100817394 1281.54