Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05071 ATGGGTGGTGAGGGTAGAGTTGAAGTTGTGAGTGGCAAAGGGTGTTCCAGGTTGTTTTCATCTTCATTTACTTCAGTCAGAGGTCTTCAGCCATTGGAGCAAATGTCTTCTGTTTCATCTTCTCCCCAAGTTTCATCAAATGCTCCTTTTGCTGGTCTTGTTATATGTGTTACTGGTTTATCTAAAGAAGCAAGGAATCAGGTCATGGAGGCTACAGAGAGATTAGGTGGCCAGTATAGTCCCAATCTGCATCCGCAATGTACTCATTTGTACAACTTTGGTGGACGCAAATTCGAGCATGCGTTGAAACATGGAGCAAAAAATGGTCTCTTTGTTGTCACACTGGGTTGGTTTGTCGACAGTGTCAGGAAAAATGTAAGGTTGACTGAATCACTTTATAGTTTGAAGAGTCATGGGGATAACAATACGCCCTTGGATGATTTTAGACTGCTTCCCGGTTATACAAATGCTGGTAATTGTCTTCCTGGAAAAATCCATGAGATCAAGCATACTCATCATGGTGAAGAATTTCAAAGATTCTCTGGGAGAGAGTCTAACAGATGTCTGGCAACTCTGTCTGGTTGCTCCATCTATGTTGATCCAAGCATTTCATCCGAATTGCAGAACAAGGTTGTTGAGGCTGCTTCAAGAGAAGGTGCTAGTTTTGTGGAACAATGGTTTGTTGGCTGCAATGTTAGTCATGTCGTGACTGAAGGGACATCCATTCAAAGATATCTTGGATACTCTAGTAACCTCATTACACCACTGTGGATTCTCAAAACAGCTAAGGAGAAACAAGTGCAAAGGTTTGTTAACATGTCTGTTGATTTAGCAAGACAAGTTGGCTTGATGCTTGAAGACGTTCATAATGGCCTTTCAGGGAAGGAAGCAGTAAAGCAAAAAGTCCTTGATGAAGTTGGTTACAAAGAAAGGCAACAAATAGTAAATTCAGCAAAAAATGGTGTCAGGAGTCGCCGTGGTCGTCGAATGCAGACATGTCAGACTCCAATCCGCCCGATAACACCTAACAACCTTCTGGACTCTATCTGCTGGTCAATATCAGAAGCAACTTCAACTGCTTCCATTTATACAGACTCTTTCAGCGCTGAAGATCCTAATGAAAATCATAATTCAATATTTTTTGATGCAAAAGGGGATGGAAAGGATGCAGACGCTTCATTTTCGAACTCGACACGTCCTCTAACAGAAAGTGAAAAATCTGAGTTGATATTTAAAAACCATTTTCTTACCATACTCTTCCCAATTGACCGGTTTTCCGAGATTGGCCCTTCCACAAGAACATTTTTTAGCCATAACGGTTTTACGTGTCTTCAGGTGTTGGATCATATCCATGCATTTTATCAGGAGAACATGCCAAGCCATGAAATAGAAGTGGCAATTCATACAGATTCAAGACATGCGGACAGACTCCGATCAGTGTACTCGAGTAAGGAAACAGCGGAGCATGGGTACGTAGTGTTCAAAAGAATTGAATTTTTGGGTAGTCGTACAAGTTTTGAAATGTTGAAACGTGTAAGTGGGGACAACAACTCCAATGTGTATGAGTTATTACTTAGGGCATAA 1584 0.4129 MGGEGRVEVVSGKGCSRLFSSSFTSVRGLQPLEQMSSVSSSPQVSSNAPFAGLVICVTGLSKEARNQVMEATERLGGQYSPNLHPQCTHLYNFGGRKFEHALKHGAKNGLFVVTLGWFVDSVRKNVRLTESLYSLKSHGDNNTPLDDFRLLPGYTNAGNCLPGKIHEIKHTHHGEEFQRFSGRESNRCLATLSGCSIYVDPSISSELQNKVVEAASREGASFVEQWFVGCNVSHVVTEGTSIQRYLGYSSNLITPLWILKTAKEKQVQRFVNMSVDLARQVGLMLEDVHNGLSGKEAVKQKVLDEVGYKERQQIVNSAKNGVRSRRGRRMQTCQTPIRPITPNNLLDSICWSISEATSTASIYTDSFSAEDPNENHNSIFFDAKGDGKDADASFSNSTRPLTESEKSELIFKNHFLTILFPIDRFSEIGPSTRTFFSHNGFTCLQVLDHIHAFYQENMPSHEIEVAIHTDSRHADRLRSVYSSKETAEHGYVVFKRIEFLGSRTSFEMLKRVSGDNNSNVYELLLRA 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05071 527 Pfam Family of unknown function (DUF6699) 351 511 IPR046522 -
Trre5g05071 527 Pfam twin BRCT domain 53 117 IPR001357 -
Trre5g05071 527 SUPERFAMILY BRCT domain 44 136 IPR036420 -
Trre5g05071 527 ProSiteProfiles BRCT domain profile. 45 135 IPR001357 -
Trre5g05071 527 PANTHER BRCT DOMAIN DNA REPAIR PROTEIN-RELATED 3 527 - -
Trre5g05071 527 ProSiteProfiles BRCT domain profile. 192 275 IPR001357 -
Trre5g05071 527 SMART BRCT_7 47 125 IPR001357 -
Trre5g05071 527 SMART BRCT_7 189 265 IPR001357 -
Trre5g05071 527 CDD BRCT_TopBP1_rpt2_like 49 125 - -
Trre5g05071 527 Gene3D BRCT domain 48 137 IPR036420 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05071 Trre-Chr5 52064141 52067489 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05071 49 135 Core DNA Replication Machinery Family AT1G77320 37.079 2.40e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05071 - - gmx:100807358 865.529