Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05067 ATGGTTTCATCAAACGATAATAATGACCAAGACCAACAACGTAAATGTCTCAAAAGAACCTTTGAACACTTGTACACAAAACCCATTGTCGATGATGCTCCTTCTGAAGAATCCCTCATTATCAACTTGGTCCCTAGAAGGTATCAGTTAGAGGCTTTTGAAGTTGCAAAGAAAAGGAACACAATTGCAATTATGGATACAGGTTCTGGTAAAACTTTGATAGCTATAATGCTTATCAAAGAAATTGGTCAATCAATTAGGTCTAGTGGAGTCAAAAAGTTGATTATTTTCTTAGCTCCAACAGTTCATCTTGTGCATCAGCAATACAAGAATATAAAAGTTAATACAGATTTTCAAGTTGGGGAATACTATGGGATGAAAGGAGTTGATACATGGAATTTAAAGTGCTGGCAGAAGGAAATTAGCGACAATGATGTGATGGTTATGACACCCCAGATTCTTTTGGATGCCTTAAGAAAAGCATTCCTGAGTATTGAAATGATACGCTTGATGGTTCTTGATGAGTGTCACTGGGCATCAGGCAACCATCCCTATGCAAAACTAATGGCGGAATTTTATCACCAAGCTAATGAAAAGCCAAAGATTTTTGGGATGACAGCATCACCAGTTGGTAAAAGAGGTGTTTCTTCTACTTTGGTTTGTGAGGATCAGATATCAGACCTTGAAAACATCTTGGACTCTCAGAGTTATGTTGTTAAAGATCGAACGGAGATGGATGTATATATCCCATCTGCAAAAGAGAGCTGTAGATATTATGACCAAGCAAGATTTCCCGCTTTGAGTTTGAAGCCAAAAATCGAAGCCTTGTGGTCAAAGTGTGATGTGTTGTTAGAATTTCAAAGTAACTTCAAGGATATGGAAAATAAATTTAAGACACTCTATCAGCGGATGTCCAATGAACTGGCCAAAATATTGTATTGCCTCGAAGATCTTGGACTGTTGTGTGCTTATGAGGCTGCTAAAATCTGTCATCAGAAATTCTCTAAAATTTGCGGAGAGTGTGAAGTTTACAGAAAAGCCAATCTTCAATGTGTAACTGTCATTGAAGAAGTGATCAAATTAATTGAAGAATCCCTTCATCTTGCCAATGAAATGATTTCGGATGTTGAATTCGATTGTTCAAAGGCAGTAGACATGGGATACATATCACCAAAATTACTTGAACTTATTAAACTCTTTGAAACATTTGGAGAACCTAGTCAGTTAATGTGCCTCATTTTTGTTGAAAGAATCATTACAGCGAAGGTGATCGAAAGATTTGTGAAAAAAGTTTCCCAGGTATCTCATCTCACAGTTGCCTATGTAACCGGAAGCAATACATCAGCTGATGCACTGGCTCGTAATAAGCAGAAAGAGACACTGGATTCTTTCCGATCCGGAAAGGTCAATCTTCTATTTACTACTGATGTACTTGAGGAAGGAATTCACGTGCCAAACTGCTCGTGTGTGATACGTTTTGACCTCCCCACGACAGTTTGTAGTTATATCCAATCTCGTGGAAGATCTAGGCGTGCTAACTCTCAATTTATTTTGATGTTGGAAAGAGGAAATTTGAAGCATAGAAATATGCTCTTTGACATAATCAGGAGTGAGCGTTCCATGAATGATGCAGCTGTTAGTAAAGAGAATGGATGTAATTTAAGGACATTTACAGTTAGGAAAATGGAAGCATACCATGTGGATTCTACTGGAGCATCAGTCAATTTAGATTCTAGTGTTAGTCTTATAAATCATTATTGCGAAAAGCTCCCACGAGATAAGTACTCCTCTGGAAAGCCAAATTTTGAGTTTGTGCCTGTGGAGGGAGGAGGGTACGAGTGTAAATTAACACTACCACCTAATGCAGCTTTCCATACAATAGTTGGTCCTTCAGGAAAAGATGTTCGGCTAGCAAAGAGTCTTGTATGTTTAGAAGCTTGTAAGAAGCTGCATCAAATGGGCAACTTGAATGATCATCTTGTTCCATCCATTGAAGATCCTCCGGAAGCAGACAACGTTGTAAAAATAAAGGAATCGAGTTCAGCTGCAGGAACCACGAAAAGAAAGGAGTTACACGGCACAACCAGCATTAAGGCATTATGTGGTTCATGGGGCGATAAACTTGATGGAGCCAAATTTCATGCTTATAAATTTGAATTTAAGTGTAATATTGTTAGTGAAATTTATTCTGGATTTGTTCTTCTGCTCGAGTCAAAGCTTGATGATGATGTGGGAAATTTGGAATTAGATCTTTATTTAATCTCAAAGTATGTGAAGACTTCTGTCATTTCATGCGGGCAAGTTGACTTGAATGCTGAACAGGTGAAGAAAGCAAAAAGCTTTCATGAACTTTTTTTCAATGCTTTGTTTGGGAGATTGATTCGTAAGTCCAAATCAAACAAGGAGGAAAGGGAATTTTTACTGCAGAAAGACACAGAACTATTGTGGAATCCAAAAAACTCGTATTTGCTTCTACCACTTAAGAAGTCAAATGACATATGTGTGGGATCTTTGCCAATACATTGGCCTGCAATCAGTTCTTGTGCTTCTGCTATTGAATTTGTAAGGCGGAAATTTTCATTGGTTACTGAAAATTCTGATGATATCAGCAAAATCATGTCAACGCCTTGTGATACCACCAATTCATCGGATATGGAACGTGAAAGCACAAACAAATTTCACTTTGCCAATTGTGCTATTGATGTTAGTGATGTGAAAGATACGGTAGCTTTGGCCATTCATACTGGGAAAGTATATTGTATCATTGATGTAGTTGAGAACTCATCCGCTGAAAGTCCTTTTGACGGAAACAGTGACAAGCCGGGAGCAGAATGCAGGATGACGTTCTCGCAGTATTTCAAGAAAAGGTATGGAATCACATTAAGACATCCGGAACAGCCTTTGTTAAGGTTGAAGCAAGGTCATAATGCACACAATCTTTTTTTGAACATGCATGACGAAGATGCTGAGGACAAATCATCACTAATTGGCCCAGTAACCAAAAAACCGCCTGTACATGTTCACATTCCTCCTGAGCTTCTTTGTCTTCTTGATATTAAAAGAGATGTGTACAAGTCAATGTACTTACTACCATCTCTTATGTACCGTATTGAATCTCTCATGTTATCCAGTCAACTTAGAGCAGAGATAAATGGCCACACCGACATTTTCAAGATACCAAGCTCTCTGGTTCTAGAAGCACTTACAACTTTAAGATGCTGTGAAAAGTTTTCGATGGAACGTCTTGAATTGCTAGGAGATTCTGTTTTGAAATACGCGGTGAGCTGTCATCTCTTTCTTAAATATCCTAAGAAACACGAAGGACACTTATCTGCCAAAAGACAATACGCTGTTCGTAATTCTACCCTACATAAACTGGGAACAGATCGCAATTTACAGGGATATATTCGAGATTCTGCATTTGATCCGCGCCGTTGGGTTGCTCCTGGACAAGACTGTATACACCCTGTTCCTTGTGATTGTGGGTTGGAAACCCTAGAAGTTCCTTTAGATAAGTTCCACACCGAAGATCCGAAAAAAGTGGTTGGGAAGCTGTGTGATAGGGGACACCGCTGGATGTGCTCGAAGACTATTGCTGACTGTGTTGAAGCTCTGATAGGGGCATACTATGTGGGTGGTGGATTGATTGCCGCACTTCACATGATGAAATGGCTTGGGATTGATTCGGGACTTGAACCATCCATGGTTGATGAAGCCATTACTGCTGCATCTCTTCACACATATACGCCAAAATTAAATGAGATTGCAATCCTTGAGACAAAAATTGGATACAAATTTTCTGTCAAGGGACTCTTAGTGGAGGCAACCACACATTTGTCCGAGTCAGAACATGGAACTGGCTGCTGCTATGAGAGGCTTGAATTCCTTGGTGACTCAGTATTGGACTTTCTCATCACATGGCATCTATATCAGAATCACACGGAAATTGATCCGGGAGAGTTGACTGACTTGCGTTCTGCTTCTGTCAATAATGACAATTTTGCTCAAGCTGCTGTTAGACGAAACCTTCATCCGCACCTTCTGCATAGCTCAGGATTATTACAAAGCCAAATATTGGAATATGCAAAGGTCATTTCAGAATCAGAAGACAAGAGCATATCAATTCCGGGGATTAAAGCTCCTAAGGCACTTGGAGATCTAGTAGAGAGTATCGCTGGGGCTATACTAATTGATACCAAGCTTGATCTTGATGTAGTGTGGAAGGTTTTCAATCCGTTGTTATCTCCCATTGTTACACCTGATAAACTTGAACTGCCTCCATTGCGTGAATTAAATCAATTATGCGACTCTCTTGGATATTTTGTAAAAATAAAAGTAAGCCGTGAGAAGAAGGGAACCATGGAGCATGTTGTGCTTAGTGTGCAGTTGCCAGATGCTAAATTGGTTCGAGATGGAATGGGACTAACTAAAAAATCTGCGAAAGGAGAGGCCGCTTTTCATTTGTTGAAGGATCTTGAGAAAAGGGGAATTTCATACAAGGGAAAAAGGGTAATGGATTTCAGTATTCCCGCTTGTCAAACGGAAGAACAATCCCCAAAGCCAGTAGCACACAAAAAGCCGAAATTGGAAAAACCTAACCCTACTGCAAATCCATCCACTAATGATCTCAAGGACAATTCTAGCGGATCTTCTGATATTAGTCGCACCATTCCAGTTATTCTATCAACTAATATGAAAAAGAAGGGAGGACCCCGGACTGAACTGTATGCAGTTTGCAAGAAAATGCAGTGGCCATTGCCTTCATTTGATTCCAAAGAATATAAAGATAGATCTCTATTTGAATCGTGTGAAGGCCTGGAAGGAAGCAAAGGACTGAACTGTTTTGTGTCGAAAATAACTTTGTGCATACCAAGTCATGGAAATTTAGAATGTGAAGGAGAAGCTAGAGCTGATAAGAAGAGCTCATTTGACTCTGCTGCAGTTCAAGTGCTTTATGAGCTACAACGCCTTGGAAAGATTACTATTGACGATGTTTCCCAATAA 5004 0.3951 MVSSNDNNDQDQQRKCLKRTFEHLYTKPIVDDAPSEESLIINLVPRRYQLEAFEVAKKRNTIAIMDTGSGKTLIAIMLIKEIGQSIRSSGVKKLIIFLAPTVHLVHQQYKNIKVNTDFQVGEYYGMKGVDTWNLKCWQKEISDNDVMVMTPQILLDALRKAFLSIEMIRLMVLDECHWASGNHPYAKLMAEFYHQANEKPKIFGMTASPVGKRGVSSTLVCEDQISDLENILDSQSYVVKDRTEMDVYIPSAKESCRYYDQARFPALSLKPKIEALWSKCDVLLEFQSNFKDMENKFKTLYQRMSNELAKILYCLEDLGLLCAYEAAKICHQKFSKICGECEVYRKANLQCVTVIEEVIKLIEESLHLANEMISDVEFDCSKAVDMGYISPKLLELIKLFETFGEPSQLMCLIFVERIITAKVIERFVKKVSQVSHLTVAYVTGSNTSADALARNKQKETLDSFRSGKVNLLFTTDVLEEGIHVPNCSCVIRFDLPTTVCSYIQSRGRSRRANSQFILMLERGNLKHRNMLFDIIRSERSMNDAAVSKENGCNLRTFTVRKMEAYHVDSTGASVNLDSSVSLINHYCEKLPRDKYSSGKPNFEFVPVEGGGYECKLTLPPNAAFHTIVGPSGKDVRLAKSLVCLEACKKLHQMGNLNDHLVPSIEDPPEADNVVKIKESSSAAGTTKRKELHGTTSIKALCGSWGDKLDGAKFHAYKFEFKCNIVSEIYSGFVLLLESKLDDDVGNLELDLYLISKYVKTSVISCGQVDLNAEQVKKAKSFHELFFNALFGRLIRKSKSNKEEREFLLQKDTELLWNPKNSYLLLPLKKSNDICVGSLPIHWPAISSCASAIEFVRRKFSLVTENSDDISKIMSTPCDTTNSSDMERESTNKFHFANCAIDVSDVKDTVALAIHTGKVYCIIDVVENSSAESPFDGNSDKPGAECRMTFSQYFKKRYGITLRHPEQPLLRLKQGHNAHNLFLNMHDEDAEDKSSLIGPVTKKPPVHVHIPPELLCLLDIKRDVYKSMYLLPSLMYRIESLMLSSQLRAEINGHTDIFKIPSSLVLEALTTLRCCEKFSMERLELLGDSVLKYAVSCHLFLKYPKKHEGHLSAKRQYAVRNSTLHKLGTDRNLQGYIRDSAFDPRRWVAPGQDCIHPVPCDCGLETLEVPLDKFHTEDPKKVVGKLCDRGHRWMCSKTIADCVEALIGAYYVGGGLIAALHMMKWLGIDSGLEPSMVDEAITAASLHTYTPKLNEIAILETKIGYKFSVKGLLVEATTHLSESEHGTGCCYERLEFLGDSVLDFLITWHLYQNHTEIDPGELTDLRSASVNNDNFAQAAVRRNLHPHLLHSSGLLQSQILEYAKVISESEDKSISIPGIKAPKALGDLVESIAGAILIDTKLDLDVVWKVFNPLLSPIVTPDKLELPPLRELNQLCDSLGYFVKIKVSREKKGTMEHVVLSVQLPDAKLVRDGMGLTKKSAKGEAAFHLLKDLEKRGISYKGKRVMDFSIPACQTEEQSPKPVAHKKPKLEKPNPTANPSTNDLKDNSSGSSDISRTIPVILSTNMKKKGGPRTELYAVCKKMQWPLPSFDSKEYKDRSLFESCEGLEGSKGLNCFVSKITLCIPSHGNLECEGEARADKKSSFDSAAVQVLYELQRLGKITIDDVSQ 1667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05067 1667 Gene3D Ribonuclease III domain 1251 1422 IPR036389 GO:0004525|GO:0006396
Trre5g05067 1667 ProSiteProfiles Ribonuclease III family domain profile. 1043 1214 IPR000999 GO:0004525|GO:0006396
Trre5g05067 1667 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1426 1494 IPR014720 -
Trre5g05067 1667 FunFam Dicer-like 104 1038 1226 - -
Trre5g05067 1667 Pfam Helicase conserved C-terminal domain 408 513 IPR001650 -
Trre5g05067 1667 Pfam Dicer dimerisation domain 579 664 - -
Trre5g05067 1667 SUPERFAMILY RNase III domain-like 1057 1228 IPR036389 GO:0004525|GO:0006396
Trre5g05067 1667 ProSitePatterns Ribonuclease III family signature. 1291 1299 IPR000999 GO:0004525|GO:0006396
Trre5g05067 1667 MobiDBLite consensus disorder prediction 1510 1553 - -
Trre5g05067 1667 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 93 519 IPR027417 -
Trre5g05067 1667 SUPERFAMILY RNase III domain-like 1255 1420 IPR036389 GO:0004525|GO:0006396
Trre5g05067 1667 Gene3D Ribonuclease III domain 1049 1225 IPR036389 GO:0004525|GO:0006396
Trre5g05067 1667 MobiDBLite consensus disorder prediction 1533 1553 - -
Trre5g05067 1667 FunFam Endoribonuclease dicer-like 1 383 546 - -
Trre5g05067 1667 FunFam Endoribonuclease dicer-like 1 574 671 - -
Trre5g05067 1667 Pfam DEAD/DEAH box helicase 47 208 IPR011545 GO:0003676|GO:0005524
Trre5g05067 1667 Gene3D - 40 276 IPR027417 -
Trre5g05067 1667 SMART PAZ_2_a_3 867 1042 IPR003100 GO:0005515
Trre5g05067 1667 Pfam PAZ domain 887 1039 IPR003100 GO:0005515
Trre5g05067 1667 CDD RIBOc 1062 1225 IPR000999 GO:0004525|GO:0006396
Trre5g05067 1667 PANTHER DICER-RELATED 59 1498 - -
Trre5g05067 1667 SMART helicmild6 418 513 IPR001650 -
Trre5g05067 1667 CDD DEXHc_dicer 45 241 - -
Trre5g05067 1667 ProSiteProfiles PAZ domain profile. 904 1018 IPR003100 GO:0005515
Trre5g05067 1667 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 52 227 IPR014001 -
Trre5g05067 1667 ProSiteProfiles Ribonuclease III family domain profile. 1255 1400 IPR000999 GO:0004525|GO:0006396
Trre5g05067 1667 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 395 552 IPR001650 -
Trre5g05067 1667 FunFam Endoribonuclease dicer-like 1 1249 1421 - -
Trre5g05067 1667 Gene3D - 384 546 IPR027417 -
Trre5g05067 1667 Gene3D paz domain 887 1016 - -
Trre5g05067 1667 CDD RIBOc 1271 1421 IPR000999 GO:0004525|GO:0006396
Trre5g05067 1667 SMART ultradead3 41 234 IPR014001 -
Trre5g05067 1667 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 579 670 IPR005034 GO:0016891
Trre5g05067 1667 FunFam Endoribonuclease dicer-like protein 40 279 - -
Trre5g05067 1667 SMART riboneu5 1062 1234 IPR000999 GO:0004525|GO:0006396
Trre5g05067 1667 SMART riboneu5 1270 1423 IPR000999 GO:0004525|GO:0006396
Trre5g05067 1667 SUPERFAMILY PAZ domain 904 1017 IPR036085 GO:0005515
Trre5g05067 1667 Gene3D - 1577 1656 - -
Trre5g05067 1667 Gene3D Dicer dimerisation domain 574 671 IPR038248 -
Trre5g05067 1667 Pfam Ribonuclease III domain 1291 1399 IPR000999 GO:0004525|GO:0006396
Trre5g05067 1667 Pfam Ribonuclease III domain 1080 1213 IPR000999 GO:0004525|GO:0006396
Trre5g05067 1667 CDD SF2_C_dicer 388 520 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05067 Trre-Chr5 52047007 52056793 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05067 410 511 Eukaryotic Initiation Factors Gene Family AT1G72730 37.736 4.53e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05067 K11592 - gmx:100806831 2318.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05067 5 52047007 52056793 Trre5g05067 5 52047007 52056793 ECH
Trre15g05086 15 60576848 60584454 Trre5g05067 5 52047007 52056793 ECH