Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05064 ATGATGCACATGACCTTTTATTGGAGCAAAAAAGTGACTCTCCTTTTCGATTCATGGAAAACCGATTCATGGACGAGTTATACACTGAGTCTACTCGCTTGTCTAATCGTTTCCATTTTCTACCAGTTTCTCGAAAATCGTCGGATTCGTCTCAAGCTGTTAGCATCCGGTAAGCCATTTCCGGAGGAGATCCAAGCTCCTCTTATAGGGCGGACGATCCTCGGAAGTAGAGCTAAATTAGGTGTTAGAGTCGCCGGAGCTGTTCTGTTCGGGTTGAGCTCTGCGATCGGGTATTTCTTGATGTTATCTGTTATGTCTTATAACGGTGGTGTGTTTATTGCTATTGTTGTTGGTCTTGCTGTTGGTTATTTAGGTTTCAGGAGTGATGGTGAAGATTCTGCTGTTGTTGATAGCTCTTGTGCATGTGCTTGA 432 0.4375 MMHMTFYWSKKVTLLFDSWKTDSWTSYTLSLLACLIVSIFYQFLENRRIRLKLLASGKPFPEEIQAPLIGRTILGSRAKLGVRVAGAVLFGLSSAIGYFLMLSVMSYNGGVFIAIVVGLAVGYLGFRSDGEDSAVVDSSCACA 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05064 143 Pfam Ctr copper transporter family 4 126 IPR007274 GO:0005375|GO:0016020|GO:0035434
Trre5g05064 143 PANTHER SOLUTE CARRIER FAMILY 31 COPPER TRANSPORTERS 1 133 IPR007274 GO:0005375|GO:0016020|GO:0035434
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05064 Trre-Chr5 52031089 52031520 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05064 1 143 Inorganic Solute Cotransporters AT5G20650 54.967 2.41e-51 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05064 K14686 - gmx:100805457 230.335
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05064 5 52031089 52031520 Trre15g00776 15 5712995 5713465 ECH
Trre5g05064 5 52031089 52031520 Trre5g05064 5 52031089 52031520 ECH